View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_28 (Length: 452)
Name: NF5921_high_28
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 1e-79; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 30 - 234
Target Start/End: Original strand, 7114209 - 7114419
Alignment:
| Q |
30 |
aatattatattatgggttacgcatgcattgcaagtttttactagtaattaaagattcaaattctctgcaacttttttcaagtacttgaatatggagtatc |
129 |
Q |
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| T |
7114209 |
aatattatattatgagttacgcatgcattgcaagtttttactagtaat---agattcaaattctctgcaacttttttcaagtacttgaatatggagtatc |
7114305 |
T |
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| Q |
130 |
tttttactagtttgaaccccatgcttctatgtaaaaaatttatg-----aaaaacatcgat----acgaaagataactaaatgatatgtttttgctctaa |
220 |
Q |
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| T |
7114306 |
tttttactagtttgaaccccatgcttctatgtaaaaaatttatgtctttaaaaacatcgatgaaaacgaaaggtaactaaattatatgtttttgctctaa |
7114405 |
T |
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| Q |
221 |
aataaacatatgtt |
234 |
Q |
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| T |
7114406 |
aataaacatatgtt |
7114419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 237 - 380
Target Start/End: Complemental strand, 37953940 - 37953799
Alignment:
| Q |
237 |
agagatgagagggaagaaaagaaaggaaatattatatggtagagagagtatatgataagatcataaagtgtacttaatcaaatggttttcataaatttgt |
336 |
Q |
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| T |
37953940 |
agagatgagagggagcaaaagaaaggaaatattatatggtagagag--tacatgataagatcataaagtgtacttaatcaaatggttttcataaatttgt |
37953843 |
T |
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| Q |
337 |
ccatcatggaccaatacatgtaaaggtccattctaaatggcacc |
380 |
Q |
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| T |
37953842 |
ccatcatggaccaatacatgtaaaggtccattctaaatggcacc |
37953799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 16407592 - 16407505
Alignment:
| Q |
293 |
aagatcataaagtgtacttaatcaaatggttttcataaatttgtccatcatggaccaatacatgtaaaggtccattctaaatggcacc |
380 |
Q |
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| T |
16407592 |
aagattataaagtgttcttattccaatggttcttataaatttgtccatcatggaccaatatatggaatggtccattctaaatgtcacc |
16407505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 16407662 - 16407608
Alignment:
| Q |
253 |
aaaagaaaggaaatattatatggtagagagagtatatgataagatcataaagtgt |
307 |
Q |
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| T |
16407662 |
aaaagaaagggaatattatatgctagagggagtacatcataagatcataaagtgt |
16407608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 7114418 - 7114451
Alignment:
| Q |
384 |
tttctgaatttaaaaatgatcctcctcaattcca |
417 |
Q |
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| T |
7114418 |
tttctgaatttaaaaatgatcctccttaattcca |
7114451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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