View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_37 (Length: 408)
Name: NF5921_high_37
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_37 |
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| [»] chr7 (4 HSPs) |
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| [»] scaffold0141 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 230 - 408
Target Start/End: Complemental strand, 8449442 - 8449264
Alignment:
| Q |
230 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagctatgcac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8449442 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac |
8449343 |
T |
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| Q |
330 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
408 |
Q |
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| T |
8449342 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
8449264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 8429756 - 8429923
Alignment:
| Q |
17 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttatgggataattagcttgag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429756 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttatgggataattagcttgag |
8429855 |
T |
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| Q |
117 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8429856 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
8429923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 408
Target Start/End: Original strand, 8429969 - 8430147
Alignment:
| Q |
230 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagctatgcac |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
8429969 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac |
8430068 |
T |
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| Q |
330 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
408 |
Q |
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| T |
8430069 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
8430147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 8449655 - 8449488
Alignment:
| Q |
17 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttatgggataattagcttgag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8449655 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttaagggataattagcttgag |
8449556 |
T |
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| Q |
117 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
184 |
Q |
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| T |
8449555 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagccagaactattgtaacacaat |
8449488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 408
Target Start/End: Complemental strand, 7579 - 7401
Alignment:
| Q |
230 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagctatgcac |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7579 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac |
7480 |
T |
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| Q |
330 |
attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaataatttaatatcacaatcat |
408 |
Q |
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| T |
7479 |
attgcaagcttaatctttgctttaatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcat |
7401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 7792 - 7625
Alignment:
| Q |
17 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttatgggataattagcttgag |
116 |
Q |
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| T |
7792 |
atgtttaaaattatcaaggttattagaaagttttaataatacagatagttgaaataggaaatctggagttttgtacttgttaagggataattagcttgag |
7693 |
T |
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| Q |
117 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7692 |
atgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat |
7625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 230 - 372
Target Start/End: Complemental strand, 4238742 - 4238600
Alignment:
| Q |
230 |
cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgccttttactcacttcctttgttttcttcaaagctatgcac |
329 |
Q |
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|||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| |
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| T |
4238742 |
cactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaatctatgcac |
4238643 |
T |
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| Q |
330 |
attgcaagcttaatctttgctttcatggagtttgagattacct |
372 |
Q |
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| T |
4238642 |
attgcaagcttaacctttgctttcatggagtttgagattacct |
4238600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 4238991 - 4238913
Alignment:
| Q |
101 |
ggataattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaac |
179 |
Q |
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|||||||||| ||| ||||||| |||||||||||||||||| |||| ||||||||| ||||||| ||||| ||||||| |
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| T |
4238991 |
ggataattagattgggatgcatatgttacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaac |
4238913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 44272624 - 44272572
Alignment:
| Q |
112 |
ttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
164 |
Q |
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| T |
44272624 |
ttgagatgtatatgttacttgtgtagcaagtaactgtgtgaaacttaactagc |
44272572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 33894552 - 33894486
Alignment:
| Q |
104 |
taattagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaac |
170 |
Q |
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||||||||||| | ||||||||||||| ||||||||||||||| | |||||||||| |||||||| |
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| T |
33894552 |
taattagcttgtattacatttgttacttgggtagcaagtaactgtttaaaacttaacttgcctaaac |
33894486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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