View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_39 (Length: 394)
Name: NF5921_high_39
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 35829217 - 35828823
Alignment:
| Q |
1 |
ttgctagacgtagcctcattggtcactaatatgaaatttaatatggttgaatcttgattttaaatagaaaattagatgtaatgaannnnnnnnacgtgtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| || |||| |
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| T |
35829217 |
ttgctagacgtagcctcattggtcactaatatgaaatttaatacggttgaatcttgattttaaatagaaaattatatgcaatgaaatttttttacatgtt |
35829118 |
T |
|
| Q |
101 |
gtccaagttttctcaannnnnnnnngaagnnnnnnncccaaattttctcatattctatgagtaacaannnnnnnncgtttatatacaccgctattatatt |
200 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
35829117 |
gtccaagttttctcaatttttttttgaagaaaaaaacccaaattttctcatattctttgagtaacaattttttttcgtttatatacaccgctattatatt |
35829018 |
T |
|
| Q |
201 |
cctgtcctatggctattttgaaataaaattaaacactacaatttatctatag---------------ataccgagtttnnnnnnngggtaaaatatttat |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||| |||||| |
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| T |
35829017 |
cctgtcctatggctattttgaaataaaattaaacactacaatttatctatagtcgataattgattagatactgagtttaaaaaa-gggtaaaa-atttat |
35828920 |
T |
|
| Q |
286 |
aaataaggaacaaaatttcacattttacatgcacagttttatccatttgagtctatttggtctcattttattttgtgtatactagaacttgaatatt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35828919 |
aaataaggaacaaaatttcacattttacatgcacagttttatccatttgagtctatttggtctcattttattttgtgtatactagaacttgaatatt |
35828823 |
T |
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