View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_44 (Length: 360)
Name: NF5921_high_44
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 55366996 - 55367092
Alignment:
| Q |
120 |
agtaatagtaatagtaattgtgtgaagtcttcttctaccgctgcaattgcctcgcctacaaaaagggtttacttgagacaatataaaccaaatattc |
216 |
Q |
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| T |
55366996 |
agtaatagtaattgtaattgtgtgaagtcttcttctaccgctgcaattgcctcgcctacaaaaagggtttacttgggacaatataaaccaaatattc |
55367092 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 256 - 342
Target Start/End: Original strand, 55367140 - 55367226
Alignment:
| Q |
256 |
ttgcattgcatcagataatgcgtcattaggctagaaaatctctgtttacttggatacccataacttacctcatctgcctcaaatctc |
342 |
Q |
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| T |
55367140 |
ttgcattgcatcagataatgcgtcattaggctagaaaatctctgtttacttggatacccataacttacctcatctgcctcaaatctc |
55367226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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