View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_high_5 (Length: 680)
Name: NF5921_high_5
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 19 - 665
Target Start/End: Complemental strand, 14775208 - 14774557
Alignment:
| Q |
19 |
ctttatatgttatacatgtttgtattcattttgttgagtataagaaacttatcttattct-----cattggatttaatgtctgcagagtgttgagttaac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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|
| T |
14775208 |
ctttatatgttatacatgtttgtattcattt-gttgagtataagaaacttatcttattctattctcatcggatttaatgtctgcagagtgttgagttaac |
14775110 |
T |
|
| Q |
114 |
aaatgaagcaattcgtttcttggagaaaatctttgatggacttgatggtgattttgtgagttatttgtgcaaatgaccctgactattttcacattttcat |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14775109 |
aaatgaagcaatttgtttcttggagaaaatctttgatggacttgatggtgattttgtgagttatttgtgcaaatgaccctgactaatttcacattttcat |
14775010 |
T |
|
| Q |
214 |
gctgcttcccaattatttttgggtattatctcttttaaccatatattttccttcctctaggataagttgttgcggccccatgaaattgaagaattgtttt |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
14775009 |
gctgcttcccaatcatttttgggtattatctcttttaaccatatattttccttcctctaggataaggtgctgcggccccatgaaattgaagaattgtttt |
14774910 |
T |
|
| Q |
314 |
ctaccgctccggaaaggtagatagattgcttgtaatctttcttatgtcgtgcaattattcaaatgtacatacatgctttaaggatgtggtctatacttgt |
413 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
14774909 |
ccaccgctccggaaaggtagatagatttcttgtaatctttcttatgtcgtgcaattattcaaatgtacatacatgcttgaaggatgtgg--tatacttgt |
14774812 |
T |
|
| Q |
414 |
gacttttcttcattgttttttacaaagtcaagctacgacattttttatatgtatg--tttcccgagtctgaatgtcaattaggactcttggcaatgttat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
14774811 |
gacttttcttcattgttttttacaaagtcaagctacgaca---tttatatgtatgcctttcccaaatctgaatgtcaattaggactcttggcaatgttat |
14774715 |
T |
|
| Q |
512 |
ttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgcattt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14774714 |
ttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgctgtagaaaggaatgcatttggaggactatcacttgatgcattt |
14774615 |
T |
|
| Q |
612 |
ttgtcagaggtgcacatgtctattatctttg----tctctagtccctcttccttgtat |
665 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
14774614 |
ttgtcagaggtgcacaagtcttttatctttgtctctctctagtccctcttccttgtat |
14774557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 254 - 660
Target Start/End: Complemental strand, 15049820 - 15049407
Alignment:
| Q |
254 |
atatattttccttcctctaggataagttgttgcggccccatgaaattgaagaattgttttctaccgctccggaaaggtagatagattgcttgtaatcttt |
353 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||| |||| |||| |||||||| |||||||||| ||||||||||||||||| |||| | | |||| |
|
|
| T |
15049820 |
atatcttttccttcctccaggataaggtgctgcaaccccgtgaacttgaagaactgttttctactgctccggaaaggtagat----tgctaatgaccttt |
15049725 |
T |
|
| Q |
354 |
cttatgtcgtgcaattattcaaatgtacatacatgc---ttt---aaggatgtggtctatacttgtgacttt---tcttcattgttttttacaaagtcaa |
444 |
Q |
| |
|
| ||| | | |||||| |||||||| ||||| | || ||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
15049724 |
cctatattgagcaatttttcaaatgcacatata-gcaattttccaaaggatgtggtatatacttgtgactttgcttcttcattgttttttacgaagtcca |
15049626 |
T |
|
| Q |
445 |
gctacgacatttttt-atatgtatg--tttcccgagtctgaatgtcaattaggactcttggcaatgttatttgatattttatgacttttaattgcagtcc |
541 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||| | |||| | |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15049625 |
gctatgacatttttttatatgtatgcctttcccgagtctgaatgtcaatttgaactcatagcaatgttatttgatattttatgatttttaattgcagtcc |
15049526 |
T |
|
| Q |
542 |
ctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgcatttttgtcagaggtgcacatgtctattatcttt |
641 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||| | |||||||| ||||||| | ||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
15049525 |
ctggattgaaaatccatacaaggatgctgtaggaaggaatatatttggagaactatcattagatgcatttttatcagaggtgcacaagtcttttatcttt |
15049426 |
T |
|
| Q |
642 |
gtctctagtccctcttcct |
660 |
Q |
| |
|
|| |||||||| ||||||| |
|
|
| T |
15049425 |
gtgtctagtccttcttcct |
15049407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 254 - 661
Target Start/End: Complemental strand, 15017047 - 15016633
Alignment:
| Q |
254 |
atatattttccttcctctaggataagttgttgcggccccatgaaattgaagaattgttttctaccgctccggaaaggtagatagattgcttgtaatcttt |
353 |
Q |
| |
|
|||| |||||||||||| |||||||| || ||| ||||||||| |||||||| ||||||||| || || |||||||| | ||||| |||||||| |
|
|
| T |
15017047 |
atatcttttccttcctccaggataaggtgctgcaaccccatgaacttgaagaactgttttctagtgccccaaaaaggtaggttgattg----taatcttt |
15016952 |
T |
|
| Q |
354 |
cttatgtcgtgcaattattcaaatgtacatacatgctttaaggatgtggtctatacttgtgacttt---tcttcattgttttttacaaagtca-agctac |
449 |
Q |
| |
|
||||||| ||| |||| ||||||||||||| || |||||||||||||| |||||| ||||||| |||||| |||||| |||||||| ||||| |
|
|
| T |
15016951 |
cttatgttgtggaatttttcaaatgtacattcaatttttaaggatgtggtttatactgctgactttgcttcttcactgtttta-acaaagtcccagctat |
15016853 |
T |
|
| Q |
450 |
gacattttttatatgtatg--tttcccgagtctgaatgtcaattaggactcttggcaatgttatttgatatttt-atgacttttaattgcagtccctgga |
546 |
Q |
| |
|
| ||| ||||||| | ||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| | | |||||||||||||||||||| |
|
|
| T |
15016852 |
ggcatcttttataggcatgcctttcccgagtctgaatgtcaattaggactcttggcaatgctttttgatatttttaaaatttttaattgcagtccctgga |
15016753 |
T |
|
| Q |
547 |
ttgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgcatttttgtcagaggtgca-----catgtctattatcttt |
641 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
15016752 |
ttgaaaatccatacaaggatgctgtagaaaggaatgcatctggaggattgtcacttgatgcatttttgtcagaggtgcagtgcacaagtcatttatcttt |
15016653 |
T |
|
| Q |
642 |
gtctctagtccctcttcctt |
661 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
15016652 |
gtctctaggccctcttcctt |
15016633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 509 - 651
Target Start/End: Complemental strand, 17882019 - 17881877
Alignment:
| Q |
509 |
tatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttgatgca |
608 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||| | |||| ||||||||||||||| ||||| |
|
|
| T |
17882019 |
tatttgatattttatgatttttaattgcagtccctggattgaatatccatatgaggatgctgtaaaaagtaaagcatgtggaggactatcactcgatgcg |
17881920 |
T |
|
| Q |
609 |
tttttgtcagaggtgcacatgtctattatctttgtctctagtc |
651 |
Q |
| |
|
||||||||||||||| | | |||| |||||||||||||||||| |
|
|
| T |
17881919 |
tttttgtcagaggtgaataagtcttttatctttgtctctagtc |
17881877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 17882513 - 17882359
Alignment:
| Q |
81 |
ttggatttaatgtctgcagagtgttgagttaacaaatgaagcaattcgtttcttggagaaaatctttgatggacttgatggtgattttgtgagttatttg |
180 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| | | ||||||| |||||| |||||||||| || || || |
|
|
| T |
17882513 |
ttggatttaatgtctgcagagtgttgaattaacaaatgaagcaattgatttcttgaagacagtttttgatgaacttgacagtgattttgtatgtcatctg |
17882414 |
T |
|
| Q |
181 |
tgcaaatgaccctgactattttcacattttcatgctgcttcccaattatttttgg |
235 |
Q |
| |
|
||| ||||||||||| || |||||| ||||||||||||| |||||| |||||||| |
|
|
| T |
17882413 |
tgctaatgaccctgaataatttcactttttcatgctgctccccaatcatttttgg |
17882359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 15050047 - 15049896
Alignment:
| Q |
19 |
ctttatatgttatacatgtttgtattcattttgttgagtataagaaacttatcttattctcattggatttaatgtctgcagagtgttgagttaacaaatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || | | | ||||||| || |||||||||||||||||||| ||||||||||| || || ||| |
|
|
| T |
15050047 |
ctttatatgttatacatgtttgtattcaatttgtcgacaacatggaacttatgctactctcattggatttaatgtctccagagtgttgaattgactgatg |
15049948 |
T |
|
| Q |
119 |
aagcaattcgtttcttggagaaaatctttgatggacttgatggtgattttgt |
170 |
Q |
| |
|
|||||||| ||||||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
15049947 |
aagcaattgatttcttggagacaatatttgatgaatttgatggtgattttgt |
15049896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 344 - 433
Target Start/End: Complemental strand, 17882143 - 17882054
Alignment:
| Q |
344 |
tgtaatctttcttatgtcgtgcaattattcaaatgtacatacatgctttaaggatgtggtctatacttgtgacttttcttcattgttttt |
433 |
Q |
| |
|
||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||| ||||||| ||||||| |||| |||||||| |
|
|
| T |
17882143 |
tgtaatctttcatatgctgtgcaatttttcaaatgtacacacatgctttaaggatgtggtatatacttttgactttgcttctttgttttt |
17882054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 15017273 - 15017127
Alignment:
| Q |
22 |
tatatgttatacatgtttgtatt-cattttgttgag--tataagaaacttatcttattctcattggatttaatgtctgcagagtgttgagttaacaaatg |
118 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||| |||| | ||||||| |||||||||||| |||||||| ||||||||||||| || ||||||| |
|
|
| T |
15017273 |
tatatgttatacctgtttgtatttcaatttgttgacaatatatggaacttattctattctcattgg-tttaatgtatgcagagtgttgaattgacaaatg |
15017175 |
T |
|
| Q |
119 |
aagcaattcgtttcttggagaaaatctttgatggacttgatggtgatt |
166 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| | ||||||| |||| |
|
|
| T |
15017174 |
aagcagttgatttcttggagacaatctttgatgaatttgatggcgatt |
15017127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 492 - 657
Target Start/End: Original strand, 36875041 - 36875206
Alignment:
| Q |
492 |
aggactcttggcaatgttatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggag |
591 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||| ||||| ||||||||||| | | ||| ||| |||||| ||| ||||| | ||||||||||| |
|
|
| T |
36875041 |
aggacccttggcaatgttatttgatattttacaattttaaattgtagtccctggatcggaaatctatatgaggatgctgttgaaagaaatgcatttggag |
36875140 |
T |
|
| Q |
592 |
gactatcacttgatgcatttttgtcagaggtgcacatgtctattatctttgtctctagtccctctt |
657 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
36875141 |
gactatcacttgatgcatttttgtctgaggtgcacacatcttctatttttgtctctagtccctctt |
36875206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 335
Target Start/End: Original strand, 36874810 - 36874897
Alignment:
| Q |
248 |
ttaaccatatattttccttcctctaggataagttgttgcggccccatgaaattgaagaattgttttctaccgctccggaaaggtagat |
335 |
Q |
| |
|
||||||| |||||||||||| |||||||| | ||||||| |||| |||| |||||||||||||||| || || |||||||||||||| |
|
|
| T |
36874810 |
ttaaccacatattttccttcatctaggatgggatgttgcgtccccgtgaacttgaagaattgttttccactgccccggaaaggtagat |
36874897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 36874607 - 36874669
Alignment:
| Q |
73 |
tattctcattggatttaatgtctgcagagtgttgagttaacaaatgaagcaattcgtttcttg |
135 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||| || ||| ||||||||||| ||||||| |
|
|
| T |
36874607 |
tattctctttggatttaacgtttgcagagtgttgaattgacacatgaagcaattgatttcttg |
36874669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 505 - 624
Target Start/End: Original strand, 53867379 - 53867498
Alignment:
| Q |
505 |
atgttatttgatattttatgacttttaattgcagtccctggattgaatatccatacaaggatgttgtagaaaggactgcatttggaggactatcacttga |
604 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||| ||||| | | ||| ||| |||||| || ||| || |||||| |||||||||||||||| |
|
|
| T |
53867379 |
atgttatttaatattttatgactgttaatttcagtccttggatcggagctccctacgaggatgctgcagatgagagcgcatttagaggactatcacttga |
53867478 |
T |
|
| Q |
605 |
tgcatttttgtcagaggtgc |
624 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
53867479 |
tgcatttttgtcaaaggtgc |
53867498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 43528020 - 43528086
Alignment:
| Q |
483 |
atgtcaattaggactcttggcaatgttatttgatattttatgacttttaattgcagtccctggattg |
549 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||||||||| || |||||||| | |||| ||||||| |
|
|
| T |
43528020 |
atgtcaatgaggactcttgccaatgatatttgatattttaggatttttaatttccgtccttggattg |
43528086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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