View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_52 (Length: 342)
Name: NF5921_high_52
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 12836661 - 12836348
Alignment:
| Q |
13 |
aatatcgatttgttaaaattctgtggcgcctctatagccgctatttgacaacaccagttatgagtgatgtttatcataattttgttgtggttgaatannn |
112 |
Q |
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| T |
12836661 |
aatatcgatttgttaaaattctgtggcgcctctatagccgctatttgacaacactggttatgagtgatgtttatcataattttgttgtggttgaatattt |
12836562 |
T |
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| Q |
113 |
nnnncatttggaaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagctctg |
212 |
Q |
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| T |
12836561 |
ttttcatttggaaggcttgtgttcgagtagttgactgaaaattgatgaccctttaaattgatgattaggataaatggggaggatcaaacctcaagctctg |
12836462 |
T |
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| Q |
213 |
ctgcaacaaagcaaaaggaagaagggcccttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctctttg |
312 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12836461 |
ctgcaacaaagcaaaaggaagaagggccgttatcacatgagtccaataaatattgtattttacacattgactcttgtcatatttgtgttttttctctttg |
12836362 |
T |
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| Q |
313 |
ctacattcaaatat |
326 |
Q |
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| T |
12836361 |
ctacattcaaatat |
12836348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 42249470 - 42249540
Alignment:
| Q |
173 |
atgattaggataaatggggaggatcaaacctcaagctctgctgcaacaaagcaaaaggaagaagggccctt |
243 |
Q |
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||||||||| ||||||| |||||||||||||| |||||| | |||||||| |||||||||||||| |||| |
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| T |
42249470 |
atgattaggttaaatggctaggatcaaacctcaggctctgttacaacaaagtaaaaggaagaagggacctt |
42249540 |
T |
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