View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_53 (Length: 325)
Name: NF5921_high_53
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_53 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 41389733 - 41390042
Alignment:
| Q |
1 |
tgtctttcacgggacnnnnnnntggaaactacggcaactgttttaaggtctttctctgacattttttatattattcatatcatttttcaatttcgtactg |
100 |
Q |
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| T |
41389733 |
tgtctttcacgggacaaaaaaatggaaactacggcaactgttttaaggtctttctccgacattttttatattattcatatcatttttcaatttcgtactg |
41389832 |
T |
|
| Q |
101 |
gatttattgctccctcttctcgagtatttggaagaggtgtgttggttcaagatgcttgggcaatagcaaagagatatatgtcatcatatttcttagttga |
200 |
Q |
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| T |
41389833 |
gatttattgctccctcttctcgagtatttggaagaggtgtgttggttcaagatgcttgggcaatagcaaagagatatatgtcatcatatttcttagttga |
41389932 |
T |
|
| Q |
201 |
cattcttgccgttcttcccctcccacaggtacggaaaactcttctgtccttgatttatttagttattgcattgaaatccaatatcaatatcataacgtgt |
300 |
Q |
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| T |
41389933 |
cattcttgccgttcttcccctcccacaggtacggaaaactcttctgtccttgatttatttagttattgcattgaaatccaatatcaatatcataacgtgt |
41390032 |
T |
|
| Q |
301 |
tggcaaattc |
310 |
Q |
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|||||||||| |
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| T |
41390033 |
tggcaaattc |
41390042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 1845508 - 1845674
Alignment:
| Q |
1 |
tgtctttcacgggacnnnnnnntggaaactacggcaactgttttaaggtctttctctgac----attttttatattattcatatcatttttcaatttcgt |
96 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
1845508 |
tgtctttcacgggacaaaaaaatggaaactacggcaactgttttaaggtctttctccgaccgacattttttatattattcatataatttttcaatttcgt |
1845607 |
T |
|
| Q |
97 |
a----ctggatttattgctccctcttctcgagtatttggaagaggtgtgttggttcaagatgcttgg |
159 |
Q |
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| T |
1845608 |
acgtactggatttattgctccctcttctcgagtatttggaagaggtgtgttggttcaagatgcttgg |
1845674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 9549927 - 9549746
Alignment:
| Q |
50 |
ctttctctgacattttttatattattcatatcatttttcaatttcgtactggatttattgctccctcttctcgagtatttggaagaggtgtgttggttca |
149 |
Q |
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|||||||||| |||||||||| || || || ||||| || |||||||||||||| |||||||| |||||||||||||||||||||||||| ||| | | |
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| T |
9549927 |
ctttctctgatgttttttatataatccacatgattttccagtttcgtactggattcattgctccttcttctcgagtatttggaagaggtgttttgatcga |
9549828 |
T |
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| Q |
150 |
agatgcttgggcaatagcaaagagatatatgtcatcatatttcttagttgacattcttgccgttcttcccctcccacaggta |
231 |
Q |
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||| | |||| ||| || ||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
9549827 |
tgattcgtgggtaattgctaagaggtatctgtcatcatatttcttagttgacattcttgcgattcttccactcccacaggta |
9549746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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