View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_55 (Length: 319)
Name: NF5921_high_55
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 8280481 - 8280779
Alignment:
| Q |
18 |
aatagtgtattatgagtgtgtata---tgagcctcttaaaaatggtcaaatgtagacctttagttttagttattaattgtattgattgatgtgtataaat |
114 |
Q |
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| T |
8280481 |
aatagtgtattatgagtgtgtataatatcaacctcttaaaaatggtcaaatgtggacctttagttttagttattaattgtattgattgatatgtagaaat |
8280580 |
T |
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| Q |
115 |
taatatattataattgtccattnnnnnnnttgagtatattataattgattgattgagttcgaatgtcgtatattattaaataggatggatttgtaaaaat |
214 |
Q |
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| T |
8280581 |
taatatattataattgtccattaaaaaaattgagtatattataattgattgattgagttcgaatgtcgtatattattaaataggatggatttgtaaaaat |
8280680 |
T |
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| Q |
215 |
aataaataaatattttgtgaaatttgattgagttcaggcttatcttactctaacctagcttgttttgatgatgttagtgctagtttattttgatgatgt |
313 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8280681 |
aataaataaatattttgtgaaatttgattgaattcaagcttatcttgctctaacctagctgattttgatgatgttagtgctagtttattttgatgatgt |
8280779 |
T |
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