View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_high_58 (Length: 299)
Name: NF5921_high_58
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_58 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 281
Target Start/End: Original strand, 35051001 - 35051271
Alignment:
| Q |
11 |
cagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaattcaagcactctttacttttgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35051001 |
cagagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaattcaagcactctttacttttgtt |
35051100 |
T |
|
| Q |
111 |
tgaacatttctattcatattatggaagtatctgattcaatataaatgtttaacaggtcccatactattctcaaagcataaatcataatattacatgttca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35051101 |
tgaacatttctattcatattatggaagtatctgattcaatataaatgtttaacaggtcccatactattctcaaagcataaatcataatattacatgttca |
35051200 |
T |
|
| Q |
211 |
gaacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagttttaatataaatcagc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35051201 |
gaacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagttttaatataaatcagc |
35051271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 20006404 - 20006137
Alignment:
| Q |
12 |
agagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaattcaagcactctttacttttgttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || |
|
|
| T |
20006404 |
agagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaataaaagtactctttacttttggtt |
20006305 |
T |
|
| Q |
112 |
gaacatttctattcatattatggaagtatctgattcaatataaatgtttaacaggtcccatactattctcaaagcataaatcataatattacatgttcag |
211 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20006304 |
gaacatttatattcatattatggaagtttctgattcaatatatttgtttaacaggtcccatattattctgaaagcataaatcataatattacatgttcat |
20006205 |
T |
|
| Q |
212 |
aacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagttttaatataaatca |
279 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
20006204 |
aacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagatttaatataaatca |
20006137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Complemental strand, 54076286 - 54076257
Alignment:
| Q |
29 |
ttagctcccttcaatccaaatcaaaaatat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
54076286 |
ttagctcccttcaatccaaatcaaaaatat |
54076257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 279
Target Start/End: Original strand, 14123962 - 14124229
Alignment:
| Q |
12 |
agagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaattcaagcactctttacttttgttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| || |
|
|
| T |
14123962 |
agagaattcaagcaaatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaataaataaaagtactctttactttttgtt |
14124061 |
T |
|
| Q |
112 |
gaacatttctattcatattatggaagtatctgattcaatataaatgtttaacaggtcccatactattctcaaagcataaatcataatattacatgttcag |
211 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14124062 |
gaacatttatattcatattatggaagtttctgattcaatatatttgtttaacaggtcccatattattctgaaagcataaatcataatattacatgttcat |
14124161 |
T |
|
| Q |
212 |
aacttttagaggtatcggttccttcttttctttctgttagtgatctagtcaagttttaatataaatca |
279 |
Q |
| |
|
|||||||| |||||| |||||||| |||||||||| || |||| |||||||| |||||||||||||| |
|
|
| T |
14124162 |
aacttttaaaggtattggttcctttttttctttctcctactgatatagtcaagatttaatataaatca |
14124229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 41700664 - 41700693
Alignment:
| Q |
29 |
ttagctcccttcaatccaaatcaaaaatat |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41700664 |
ttagctcccttcaatccaaatcaaaaatat |
41700693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 48475590 - 48475622
Alignment:
| Q |
26 |
aatttagctcccttcaatccaaatcaaaaatat |
58 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
48475590 |
aatttagctcccttcaatccaaatcaagaatat |
48475622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 53324480 - 53324401
Alignment:
| Q |
156 |
tgtttaacaggtcccatactattctcaaagcataaatcataatattacatgttcagaacttttagaggtatcggttcctt |
235 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53324480 |
tgtttaacaggttccatattattctcaaagcataaatcataatattacatgttcagaacttttagaggtattggttcctt |
53324401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 49962433 - 49962477
Alignment:
| Q |
28 |
tttagctcccttcaatccaaatcaaaaatattttgttgaagtaaa |
72 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| | ||||||| |
|
|
| T |
49962433 |
tttagctcccttcaatccaaatcaagaacattttggtcaagtaaa |
49962477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 8532316 - 8532270
Alignment:
| Q |
26 |
aatttagctcccttcaatccaaatcaaaaatattttgttgaagtaaa |
72 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||| ||||||||| |
|
|
| T |
8532316 |
aatttagctcccttcaatccaaatcaagaacattttgctgaagtaaa |
8532270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 38176560 - 38176503
Alignment:
| Q |
28 |
tttagctcccttcaatccaaatcaaaaatattttgttgaagtaaatcaggtccaaata |
85 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| | ||||||| |||| |||||| |
|
|
| T |
38176560 |
tttagctcccttcaatccaaatcaagaacattttggtcaagtaaacaaggtgcaaata |
38176503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University