View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_60 (Length: 286)
Name: NF5921_high_60
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_60 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 75 - 270
Target Start/End: Original strand, 11370982 - 11371178
Alignment:
| Q |
75 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgagccttgtatatggtccaccatgctgtgccattggg |
174 |
Q |
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| T |
11370982 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgatacttgtatatggtccaccatactgtgccactgat |
11371081 |
T |
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| Q |
175 |
-cttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcatgaaaattgaactatttta |
270 |
Q |
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| T |
11371082 |
acttgtatatggttcacggttgggattttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcacgaaaattgaactatttta |
11371178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 11356358 - 11356216
Alignment:
| Q |
128 |
atatgcagttgagccttgtatatggtccaccatgctgtgccattgggcttgtatatggttcacggttgggcttttgaagaaaaccacaccgaactggttc |
227 |
Q |
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| T |
11356358 |
atatgcagttgatacttgtatatggtccaccatgctgtgccactgggcttttatatggttcacggttgggcttttgaagaaaaccacaccgaactggttc |
11356259 |
T |
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| Q |
228 |
tgaactaaatcagaagacagatcatgaaaattgaactatttta |
270 |
Q |
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| T |
11356258 |
tgaactaaatcagaagacagatcacgaaaattgaactatttta |
11356216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 11370830 - 11370897
Alignment:
| Q |
6 |
cacagatgaggaaaggcatgcaatacaatttatattggatcaactcagaaatatatctgagtagaaaa |
73 |
Q |
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| T |
11370830 |
cacagatgaggaaaggcatgcaatacaatttatattggatcaactcagaaatatatctgagtagaaaa |
11370897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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