View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_67 (Length: 263)
Name: NF5921_high_67
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_67 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 7997705 - 7997467
Alignment:
| Q |
1 |
caaacaaaccaaattatggaagtttgtgtgggtcatgcaccacatatagcgtnnnnnnnnnnnnnnnnnctatatatacatataagaaatctcttccacc |
100 |
Q |
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| T |
7997705 |
caaacaaaccaaattatggaagtttgtgtgggtcatgcaccacatatagcgtaaaaaaaaa--------ctatatatacatataagaaatctcttccacc |
7997614 |
T |
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| Q |
101 |
aatattgcttgtcatttagtttttctgtattttgaaaaactcaaattgtatttgagatttaataaatcaaaataatctagaaactttgttttaaaaacga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7997613 |
aatattgcttgtcatttagtttttctgtattttgaaaaactcaaattatatttgagatttaataaatcaaaataatctagaaactttgttttaaaaacga |
7997514 |
T |
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| Q |
201 |
aatggaaaaagggaaatgtttattgttatgtgttgtagagtaataat |
247 |
Q |
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| T |
7997513 |
aatggaaaaaggaaaatgtttattgttatgtgttgtagagtaataat |
7997467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 8958490 - 8958397
Alignment:
| Q |
154 |
gagatttaataaatcaaaataatctagaaactttgttttaaaaacgaaatggaaaaagggaaatgtttattgttatgtgttgtagagtaataat |
247 |
Q |
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| T |
8958490 |
gagatttaataaatcaaaataatctagaaactttgttttaaaaacgaaatggaaaaaggaaaatgtttattgttatgtgttgtagagtaataat |
8958397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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