View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_70 (Length: 254)
Name: NF5921_high_70
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_70 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0394 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 38 - 254
Target Start/End: Complemental strand, 17831958 - 17831741
Alignment:
| Q |
38 |
tatactcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatg |
136 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17831958 |
tatactcactgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtagctgctaaatgatatatg |
17831859 |
T |
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| Q |
137 |
ctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaa |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
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| T |
17831858 |
ctttttattatactaattgaattagatattgtgatttacgcataggttcctgtttattcaaatgaatggttggaatgaacatttggaacacaatacacaa |
17831759 |
T |
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| Q |
237 |
gaagaagaagatgatgat |
254 |
Q |
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|||||||||||||||||| |
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| T |
17831758 |
gaagaagaagatgatgat |
17831741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 16546468 - 16546559
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
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||||||| |||||| ||||||||| |||||| ||||||||| ||| || ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
16546468 |
atattgtcatttacacacaggttcac-tttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagatgatgat |
16546559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 43 - 254
Target Start/End: Complemental strand, 9927 - 9715
Alignment:
| Q |
43 |
tcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatgctttt |
141 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
9927 |
tcactgctatactactgctatcagatacaattacttgctttacttcaaattggatggtatgtttatacacctctttagctgataaatgatatatgctttt |
9828 |
T |
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| Q |
142 |
tattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaaga |
241 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
9827 |
tatgatactaattgaattagatattttgatttacgcacaggttcatgtttattaaaatgaatggttggaatgaacatttggaacacaatacacaagaaga |
9728 |
T |
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| Q |
242 |
agaagatgatgat |
254 |
Q |
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||||||| ||||| |
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| T |
9727 |
agaagattatgat |
9715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 10373357 - 10373165
Alignment:
| Q |
38 |
tatactcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatg |
136 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |
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| T |
10373357 |
tatactcactgctatactactgctatcaaatacaattacttgctttacttcaaattgaatggtatgtttatacacctctgtagctactaaatgatatatg |
10373258 |
T |
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| Q |
137 |
ctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaa |
229 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |
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| T |
10373257 |
ctttttattatattaattgaattagatattgtgatttatgcacaggttcctgtttattaaaatgaatggttggaatgaacatttggaacacaa |
10373165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 37637719 - 37637811
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
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||||||| |||||| |||| || | | |||||| ||||||||| || || ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
37637719 |
atattgtcatttacacacaagtccatctttattaaaatgaatgtatggaaggaacaattggaacacaatacacaagaagaagaagatgatgat |
37637811 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 253
Target Start/End: Complemental strand, 16247904 - 16247772
Alignment:
| Q |
121 |
tgctaaatgatatatgctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacattt |
220 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||| |||| |||||| | |||| |||||||||||||||| ||| |||| |
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| T |
16247904 |
tgctaaatgatagatgctttttgttatactaattgaattagagattgcgatttacacacaagttcctctctattaaaatgaatggttgaaaagaatattt |
16247805 |
T |
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| Q |
221 |
gaaacacaatacacaagaagaagaagatgatga |
253 |
Q |
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||||||||||||||||||||||||| ||||| |
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| T |
16247804 |
agaacacaatacacaagaagaagaagaagatga |
16247772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 15617861 - 15617953
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
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|||||||||||||| ||||||| | | |||||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15617861 |
atattgtgatttacacacaggtccatctttattaaaatgaatggttggaaggaacatttggaacacaatacacaagaagaagaagatgatgat |
15617953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 16564554 - 16564646
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
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||||||| |||||| ||||||| | | |||||| ||||||||| ||| || ||||| ||| |||||||||||||||| ||||||||||||||| |
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| T |
16564554 |
atattgtcatttacacacaggtccatctttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaggaagaagatgatgat |
16564646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 22480524 - 22480615
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
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||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
22480524 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgat |
22480615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 36310606 - 36310697
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
| |
|
||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
36310606 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgat |
36310697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 5917966 - 5917925
Alignment:
| Q |
213 |
gaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
5917966 |
gaacaattggaacacaatacacaagaagaagaagatgatgat |
5917925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 254
Target Start/End: Complemental strand, 35570981 - 35570890
Alignment:
| Q |
162 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgat |
254 |
Q |
| |
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||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
35570981 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgat |
35570890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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