View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_75 (Length: 247)
Name: NF5921_high_75
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_75 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 9819796 - 9820024
Alignment:
| Q |
19 |
gataaagcatcataagttgggttaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactccttttcatcaacactac |
118 |
Q |
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| T |
9819796 |
gataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactccttgtcatcaacactac |
9819895 |
T |
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| Q |
119 |
ttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaaccacact |
218 |
Q |
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| T |
9819896 |
tcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaaccacact |
9819995 |
T |
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| Q |
219 |
gcaaaaccaattctccatgtgattaaatt |
247 |
Q |
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| T |
9819996 |
gcaaaaccaattctccatgtgattaaatt |
9820024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 9854184 - 9853956
Alignment:
| Q |
19 |
gataaagcatcataagttgggttaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactccttttcatcaacactac |
118 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9854184 |
gataaagcatcaaaagttggattaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactccttgtcatcaacactac |
9854085 |
T |
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| Q |
119 |
ttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaaccacact |
218 |
Q |
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| T |
9854084 |
tcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaacatgttcccacaaaccacact |
9853985 |
T |
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| Q |
219 |
gcaaaaccaattctccatgtgattaaatt |
247 |
Q |
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| T |
9853984 |
gcaaaaccaattctccatgtgattaaatt |
9853956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 47523783 - 47523576
Alignment:
| Q |
19 |
gataaagcatcataagttgggttaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactccttttcatcaacactac |
118 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| |||| || |||| || ||| |
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| T |
47523783 |
gataaagcatcaatagttgggttaaaactctcatacaatacatcaagagccatattcaactttatcttcttttgactaaa------ttgatcatcattac |
47523690 |
T |
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| Q |
119 |
ttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaaccacact |
218 |
Q |
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| T |
47523689 |
tcacattcttcaataatgtccaagttagattagctgcaactgttattggtttccctgacaacttctttagacataagaacatgttaccacaaactacact |
47523590 |
T |
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| Q |
219 |
gcaaaaccaattct |
232 |
Q |
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| T |
47523589 |
gcaaaaccaattct |
47523576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 47529050 - 47528924
Alignment:
| Q |
106 |
tcatcaacactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcc |
205 |
Q |
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|||||| ||||| | |||||||||| || |||||| |||||||| ||||||||||| |||||||| | | | |||||||||||||| |||| ||||| |
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| T |
47529050 |
tcatcatcactattcacattcttcaacagtgtccaagttagattgtctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttca |
47528951 |
T |
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| Q |
206 |
cacaaaccacactgcaaaaccaattct |
232 |
Q |
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| T |
47528950 |
cgcaaactatattgcaaaaccaattct |
47528924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 47529157 - 47529073
Alignment:
| Q |
17 |
cagataaagcatcataagttgggttaaaaccctcatacaatacaccaagagccatattcaacttactctccttttgattaaactc |
101 |
Q |
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| T |
47529157 |
cagataaagcatcaatagttggataaaaactctcatacaatacatgaagagccacatttaacttacgcttcttttgactaaactc |
47529073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 44870755 - 44870874
Alignment:
| Q |
113 |
cactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaac |
212 |
Q |
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||||||| |||||||||| ||||||||| ||| ||||||||||||||| |||||||| || | | |||||||||||||| |||||||||||||||||| |
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| T |
44870755 |
cactactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaac |
44870854 |
T |
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| Q |
213 |
cacactgcaaaaccaattct |
232 |
Q |
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| T |
44870855 |
tacactgcaaaaccaattct |
44870874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 44870641 - 44870705
Alignment:
| Q |
17 |
cagataaagcatcataagttgggttaaaaccctcatacaatacaccaagagccatattcaactta |
81 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
44870641 |
cagataaagcatcaatagttggattaaaaccctcatacaatacaccaagagctgcattcaactta |
44870705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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