View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_80 (Length: 241)
Name: NF5921_high_80
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_80 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0300 (1 HSPs) |
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| [»] scaffold0212 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42451498 - 42451723
Alignment:
| Q |
16 |
taagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttctttgtcggctgtaaaccattttcgatcttagccaatc |
115 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42451498 |
taagaaatatatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttctttgtcggctgtaaaccaatttcgatcttagccaatc |
42451597 |
T |
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| Q |
116 |
tcaggttgaccgtctctttggccccctttcaatgcacttactttgtgattttcaagggttttaggatggccactccactaatttagttttaatacttcct |
215 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42451598 |
tcaggttgaccgtctcttcggccccctttcgatgcacttactttgtgattttcaagggtttttggatggccactccactaatttagttttaatacttcct |
42451697 |
T |
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| Q |
216 |
tttgttatatttgcagctactattac |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42451698 |
tttgttatatttgcagctactattac |
42451723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 11677923 - 11678065
Alignment:
| Q |
16 |
taagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttctttgtcggctgtaaaccattttcgatcttagccaatc |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||| ||| |
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| T |
11677923 |
taagaaatgtatgtgcttggttgttttgtttaccaaccctgaaagaattgtgactcttttttctttgtcgactataaaccaatttcaatcttagccgatc |
11678022 |
T |
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| Q |
116 |
tcaggttgaccgtctctttggccccctttcaatgcacttactt |
158 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
11678023 |
tcaggttgaccgtctctctggccccctttcgatgcacttactt |
11678065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 7006 - 6864
Alignment:
| Q |
16 |
taagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttctttgtcggctgtaaaccattttcgatcttagccaatc |
115 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| |
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| T |
7006 |
taagaaatgtatgtgtttggttgttttgtttaccaaccctgaaagaattgtgactcttttttctttgtcgactgtaaaccaatttcgatcttagccgatc |
6907 |
T |
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| Q |
116 |
tcaggttgaccgtctctttggccccctttcaatgcacttactt |
158 |
Q |
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||||||||||| ||||| || |||||||| ||||||||||| |
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| T |
6906 |
tcaggttgaccatctctccgggcccctttcggtgcacttactt |
6864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 34369037 - 34368912
Alignment:
| Q |
16 |
taagaaatgtatgtgcttggttgttttgtctaccaaccctgaaagaattgtgactcttttttctttgtcggctgtaaaccattttcgatcttagccaatc |
115 |
Q |
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|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| ||| |
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| T |
34369037 |
taagaaatgtatgtgcttcgttggtttgtttaccaaccctgaaagaattgtgactctttt--ctttgtcggatgtaaaccaatttcgatcttagccgatc |
34368940 |
T |
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| Q |
116 |
tcaggttgaccgtctctttggccccctt |
143 |
Q |
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|||||||||||||||||| ||| ||||| |
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| T |
34368939 |
tcaggttgaccgtctcttcggctccctt |
34368912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 40265541 - 40265471
Alignment:
| Q |
88 |
tgtaaaccattttcgatcttagccaatctcaggttgaccgtctctttggccccctttcaatgcacttactt |
158 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
40265541 |
tgtaaaccaatttcgatcttagccgatctcaggttgaccgtctctccggcccccgttcggtgcacttactt |
40265471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 27448 - 27419
Alignment:
| Q |
67 |
gactcttttttctttgtcggctgtaaacca |
96 |
Q |
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| T |
27448 |
gactcttttttctttgtcggctgtaaacca |
27419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Complemental strand, 214870 - 214841
Alignment:
| Q |
67 |
gactcttttttctttgtcggctgtaaacca |
96 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
214870 |
gactcttttttctttgtcggctgtaaacca |
214841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 21957978 - 21958007
Alignment:
| Q |
67 |
gactcttttttctttgtcggctgtaaacca |
96 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21957978 |
gactcttttttctttgtcggctgtaaacca |
21958007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 24749168 - 24749197
Alignment:
| Q |
67 |
gactcttttttctttgtcggctgtaaacca |
96 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24749168 |
gactcttttttctttgtcggctgtaaacca |
24749197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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