View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_84 (Length: 234)
Name: NF5921_high_84
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_84 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 1719762 - 1719551
Alignment:
| Q |
14 |
agaaggacaccaaattgttgcaaattcaaattcacctagcaaccatgaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaa |
113 |
Q |
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| T |
1719762 |
agaaggacaccaaattgttgcaaattcaaattcacctagcaaccatgaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaa |
1719663 |
T |
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| Q |
114 |
gcatcaaatggtctattttggcgggtacttggtccatccttaagctattcaatttaaatcattttaatcaaattatgtactctaaataagtactatactt |
213 |
Q |
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| T |
1719662 |
gcatcaaatggtctattttggcgggtacttgctctatcc---------tcaatttaaatcattttaatcaaatcatgcactctaaataagtactctactt |
1719572 |
T |
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| Q |
214 |
ctaaacaaatcttaagagacc |
234 |
Q |
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| T |
1719571 |
ctaaacaaatcttaagagacc |
1719551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 143
Target Start/End: Complemental strand, 1742314 - 1742215
Alignment:
| Q |
44 |
ttcacctagcaaccatgaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaagcatcaaatggtctattttggcgggtactt |
143 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
1742314 |
ttcacctagcaacctagaaacatttcagattataaggaataatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcaggtactt |
1742215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 1756322 - 1756218
Alignment:
| Q |
38 |
ttcaaattcacctagcaaccatgaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaagcatcaaatggtctattttggcgg |
137 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||||| ||||| | |
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| T |
1756322 |
ttcaaattcacctagcaaccaagaaacatttcagattataaggaacagtggtgatcccctcaaaattcgaatcaaagcatcaaatggtctatattggcag |
1756223 |
T |
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| Q |
138 |
gtact |
142 |
Q |
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||||| |
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| T |
1756222 |
gtact |
1756218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 1750986 - 1750882
Alignment:
| Q |
38 |
ttcaaattcacctagcaaccatgaaacatttcagattataaggaataaaaatgaacctctcaaaattcgaatcaaagcatcaaatggtctattttggcgg |
137 |
Q |
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|||| |||||||| ||||| ||||||||||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||| || | |
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| T |
1750986 |
ttcagattcacctggcaacagagaaacatttcagattataaggaacaatgatgatcccctcaaaattcgaatcaaagcatcaaatggtctatttttgcag |
1750887 |
T |
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| Q |
138 |
gtact |
142 |
Q |
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||||| |
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| T |
1750886 |
gtact |
1750882 |
T |
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