View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_10 (Length: 579)
Name: NF5921_low_10
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Original strand, 45142400 - 45142892
Alignment:
| Q |
17 |
atttccttggatccaattttaatctattgtttcataacaatagattcaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatg |
116 |
Q |
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| T |
45142400 |
atttccttgcatccaattttaatctattatttcataacaatagattgaagtcttgatgaagcaatcaaagaagctatatggctgagaggtatcattcatg |
45142499 |
T |
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| Q |
117 |
aacttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatcc |
216 |
Q |
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| T |
45142500 |
aacttgagtacttgacaagttgctgattggtttgaacttgatcatttacaaagtagttacaaacttaaaagaaaaaagtgattaacaagtcactaaatcc |
45142599 |
T |
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| Q |
217 |
ttgcactgaagaatcttcaaatatttgacagagtactattaaacaagttattaaatctctgttaattttatggtgataaataagaaaacaaatgtcctca |
316 |
Q |
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| T |
45142600 |
ttgcactgaagaatcttcaaatatttgacagagtactattaaacaagttattaaatctctgttaattttatggtgataaattagaaaacaaatgtcctca |
45142699 |
T |
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| Q |
317 |
aaatcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaactt |
416 |
Q |
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| T |
45142700 |
aaatcattccaatcagcctggagagataagtgatgcagaaacagattgagaatggttcttgtggcccatttcgagatcctattagtgagtatttcaactt |
45142799 |
T |
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| Q |
417 |
ctcgtgtttatagtttcatccagcttctagagtggaaaagtgtttaacacggtctacaaaaaacaaatgcttggaaattgtttgaaactctaa |
509 |
Q |
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| T |
45142800 |
ctcgtgtttatagtttcatccggcttctagagtggaaaagtgtttaacacggtctacaacaaacaaatgcttggaaattgtttgatactctaa |
45142892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 45142927 - 45142990
Alignment:
| Q |
506 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
569 |
Q |
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| T |
45142927 |
ctaatattcattttctcttgtttatttttgaattaacactgattaaatgactgtcttatctgtg |
45142990 |
T |
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