View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_16 (Length: 521)

Name: NF5921_low_16
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_16
NF5921_low_16
[»] chr8 (19 HSPs)
chr8 (172-521)||(27027340-27027689)
chr8 (172-277)||(25978717-25978822)
chr8 (173-277)||(8235375-8235479)
chr8 (170-207)||(33837972-33838009)
chr8 (171-207)||(9739983-9740019)
chr8 (171-207)||(27024431-27024467)
chr8 (173-207)||(2509039-2509073)
chr8 (173-207)||(45334519-45334553)
chr8 (173-206)||(25106455-25106488)
chr8 (173-206)||(28379191-28379224)
chr8 (173-206)||(33837729-33837762)
chr8 (173-206)||(45334276-45334309)
chr8 (173-205)||(9740231-9740263)
chr8 (170-206)||(25979003-25979039)
chr8 (170-205)||(13469505-13469540)
chr8 (172-207)||(25106210-25106245)
chr8 (170-208)||(27793433-27793471)
chr8 (178-207)||(13469748-13469777)
chr8 (173-206)||(38495472-38495505)
[»] chr2 (12 HSPs)
chr2 (172-419)||(10112338-10112585)
chr2 (172-387)||(36963455-36963668)
chr2 (480-521)||(10112624-10112665)
chr2 (173-206)||(15233999-15234032)
chr2 (173-206)||(43040849-43040882)
chr2 (172-205)||(43041094-43041127)
chr2 (173-205)||(44104546-44104578)
chr2 (172-207)||(35793149-35793184)
chr2 (172-207)||(41252414-41252449)
chr2 (173-207)||(10118695-10118729)
chr2 (173-207)||(44104799-44104833)
chr2 (175-207)||(15233757-15233789)
[»] chr1 (18 HSPs)
chr1 (172-521)||(33023112-33023462)
chr1 (170-207)||(4055481-4055518)
chr1 (170-207)||(47669116-47669153)
chr1 (172-207)||(4817268-4817303)
chr1 (170-277)||(37875724-37875830)
chr1 (173-207)||(9831503-9831537)
chr1 (172-206)||(10737700-10737734)
chr1 (173-207)||(18126851-18126885)
chr1 (173-207)||(33020206-33020240)
chr1 (172-206)||(46220503-46220537)
chr1 (173-206)||(47669363-47669396)
chr1 (171-204)||(48565063-48565096)
chr1 (174-206)||(1236071-1236103)
chr1 (173-207)||(1236273-1236307)
chr1 (176-206)||(9831747-9831777)
chr1 (173-207)||(46220259-46220293)
chr1 (170-207)||(1749566-1749603)
chr1 (173-206)||(8889687-8889720)
[»] chr5 (15 HSPs)
chr5 (172-419)||(42793347-42793596)
chr5 (167-373)||(41610367-41610574)
chr5 (173-230)||(8724926-8724983)
chr5 (173-207)||(12399189-12399223)
chr5 (173-207)||(23090298-23090332)
chr5 (172-206)||(29875198-29875232)
chr5 (173-207)||(34208538-34208572)
chr5 (173-206)||(12398946-12398979)
chr5 (172-205)||(23090543-23090576)
chr5 (173-206)||(42757805-42757838)
chr5 (171-207)||(3077595-3077631)
chr5 (173-207)||(4145694-4145728)
chr5 (173-207)||(29874954-29874988)
chr5 (172-206)||(34208782-34208816)
chr5 (173-207)||(42793040-42793074)
[»] chr4 (13 HSPs)
chr4 (173-419)||(19256894-19257137)
chr4 (187-248)||(51830715-51830776)
chr4 (170-207)||(19256183-19256220)
chr4 (168-207)||(30469411-30469450)
chr4 (172-207)||(36016278-36016313)
chr4 (172-207)||(8956019-8956054)
chr4 (172-207)||(45590741-45590776)
chr4 (176-206)||(8955779-8955809)
chr4 (172-206)||(49162332-49162366)
chr4 (170-207)||(39481900-39481937)
chr4 (173-206)||(45590986-45591019)
chr4 (171-207)||(33288648-33288684)
chr4 (174-206)||(39482106-39482138)
[»] chr7 (21 HSPs)
chr7 (173-280)||(29723307-29723414)
chr7 (188-280)||(43706348-43706440)
chr7 (187-248)||(33379003-33379064)
chr7 (171-206)||(4405353-4405388)
chr7 (172-207)||(29427407-29427442)
chr7 (171-206)||(29890824-29890859)
chr7 (172-207)||(43701550-43701585)
chr7 (173-207)||(6387935-6387969)
chr7 (173-207)||(17904163-17904197)
chr7 (173-207)||(26770179-26770213)
chr7 (173-207)||(37179574-37179608)
chr7 (173-207)||(46467578-46467612)
chr7 (173-206)||(17904407-17904440)
chr7 (173-206)||(37179331-37179364)
chr7 (172-205)||(46467334-46467367)
chr7 (16-73)||(6086810-6086869)
chr7 (173-205)||(29891071-29891103)
chr7 (173-207)||(33379210-33379244)
chr7 (172-205)||(4405108-4405141)
chr7 (173-206)||(6387692-6387725)
chr7 (172-205)||(26770424-26770457)
[»] chr3 (31 HSPs)
chr3 (188-280)||(49319623-49319715)
chr3 (304-387)||(46878813-46878895)
chr3 (171-207)||(1352239-1352275)
chr3 (170-206)||(29014687-29014723)
chr3 (167-207)||(39528743-39528783)
chr3 (172-207)||(29371781-29371816)
chr3 (166-205)||(46878980-46879019)
chr3 (173-207)||(18996967-18997001)
chr3 (173-207)||(18999506-18999540)
chr3 (173-207)||(32677720-32677754)
chr3 (172-206)||(36737833-36737867)
chr3 (172-206)||(38855561-38855595)
chr3 (172-206)||(39518651-39518685)
chr3 (172-206)||(41349370-41349404)
chr3 (173-207)||(41349614-41349648)
chr3 (173-206)||(1351996-1352029)
chr3 (173-206)||(18997211-18997244)
chr3 (173-206)||(18999750-18999783)
chr3 (173-206)||(39528993-39529026)
chr3 (172-207)||(55365907-55365942)
chr3 (173-207)||(28228436-28228470)
chr3 (173-207)||(39807222-39807256)
chr3 (185-219)||(46878945-46878979)
chr3 (173-207)||(49319347-49319381)
chr3 (170-207)||(22157255-22157292)
chr3 (173-206)||(29371538-29371571)
chr3 (173-206)||(32677477-32677510)
chr3 (173-206)||(39806979-39807012)
chr3 (171-207)||(21974147-21974183)
chr3 (171-207)||(21996578-21996614)
chr3 (171-207)||(36738077-36738113)
[»] chr6 (16 HSPs)
chr6 (171-207)||(27312359-27312395)
chr6 (172-207)||(32274433-32274468)
chr6 (172-206)||(27312113-27312147)
chr6 (173-207)||(29302514-29302548)
chr6 (172-242)||(34045060-34045130)
chr6 (173-206)||(8504733-8504766)
chr6 (166-207)||(12174693-12174734)
chr6 (172-207)||(7156468-7156503)
chr6 (172-206)||(2543325-2543359)
chr6 (172-242)||(31170989-31171059)
chr6 (173-206)||(18741947-18741980)
chr6 (173-206)||(32274678-32274711)
chr6 (175-207)||(8504945-8504977)
chr6 (173-205)||(18742191-18742223)
chr6 (171-207)||(29452786-29452822)
chr6 (307-343)||(34045280-34045316)
[»] scaffold0103 (1 HSPs)
scaffold0103 (165-206)||(44862-44903)


Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 172 - 521
Target Start/End: Complemental strand, 27027689 - 27027340
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  27027689 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 27027590  T
Q  272 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 371  Q
    |||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27027589 cccttactttactccatgatttttttttctcaaaattctaatctccttaattattgaaactcaccacacaaattgcatttattatttaaacttccaattt 27027490  T
Q  372 tctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaannnnnnnnnnnnactttcctgtatttccttccannnnnnnncccaccaatac 471  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||             |||||| |||||||||||||        |||||||||||    
T  27027489 tttcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaattgttttttttttctttccagtatttccttccattttttttcccaccaatac 27027390  T
Q  472 atttagtatttcccaccttatactttatacttttgaggtttttaaatttt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27027389 atttagtatttcccaccttatactttatacttttgaggtttttaaatttt 27027340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 172 - 277
Target Start/End: Original strand, 25978717 - 25978822
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| || |||| |||||| ||||  ||||  ||||||||     
T  25978717 atactacctccatttcttttcttttgatgttttaggtgattgcacaagtattaaggaatcatttaagtatatgaataattgtaaggttttgactaaaatg 25978816  T
Q  272 ccctta 277  Q
    ||||||    
T  25978817 ccctta 25978822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 8235479 - 8235375
Alignment:
Q  173 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaatac 272  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||| |||||  |||| |||||| |||| ||| |    
T  8235479 tactctctccatttcttttcttttgatattttagatgattgcacatatattcaggaatcattaaaatataagaatagttgtaaagtttagactataatgc 8235380  T
Q  273 cctta 277  Q
    |||||    
T  8235379 cctta 8235375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 33838009 - 33837972
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33838009 taatactccctccattccttttcttttgatgttttaga 33837972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 9739983 - 9740019
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||||    
T  9739983 aatactccctccattccttttcttttgatgttttaga 9740019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 27024431 - 27024467
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||||    
T  27024431 aatactccctccattccttttcttttgatgttttaga 27024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 2509073 - 2509039
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgttttaga 2509039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 45334553 - 45334519
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgttttaga 45334519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 25106488 - 25106455
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  25106488 tactccctccattccttttcttttgatgttttag 25106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 28379224 - 28379191
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttag 28379191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 33837729 - 33837762
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttag 33837762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 45334276 - 45334309
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttag 45334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 9740263 - 9740231
Alignment:
Q  173 tactccctccattccttttcttttgatgtttta 205  Q
    |||||||||||||||||||||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgtttta 9740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 25979039 - 25979003
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||| ||||||||||||||||||||    
T  25979039 taatactccctccatttcttttcttttgatgttttag 25979003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 13469505 - 13469540
Alignment:
Q  170 taatactccctccattccttttcttttgatgtttta 205  Q
    ||||||||| ||||||||||||||||||||||||||    
T  13469505 taatactccttccattccttttcttttgatgtttta 13469540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 25106210 - 25106245
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    |||||| |||||||||||||||||||||||||||||    
T  25106210 atactctctccattccttttcttttgatgttttaga 25106245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 27793471 - 27793433
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttagat 208  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  27793471 taatactccttccattcattttcttttgatgttttagat 27793433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 13469777 - 13469748
Alignment:
Q  178 cctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||    
T  13469777 cctccattccttttcttttgatgttttaga 13469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 38495472 - 38495505
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||| |||||||||||||||||||    
T  38495472 tactccctccattcattttcttttgatgttttag 38495505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 172 - 419
Target Start/End: Original strand, 10112338 - 10112585
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10112338 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 10112437  T
Q  272 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 371  Q
    |||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10112438 cccttactttactccatgatttttttttctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 10112537  T
Q  372 tctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10112538 tctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaa 10112585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 172 - 387
Target Start/End: Complemental strand, 36963668 - 36963455
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||||| |||||||||||||||    
T  36963668 atactctctctattccttttcttttgatgttttaggtgattgcacaaatattaagaaattattaaattatagaaataattgtatggtttatactaaaata 36963569  T
Q  272 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 371  Q
    | ||||| ||||||| |||         ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  36963568 ctcttac-ttactccttga-ttttttttctcaaaattctaatctccttaattattgacactcaccacacaaattgcatttattatttaaactttcaattt 36963471  T
Q  372 tctcaaacttatcaca 387  Q
    | ||||||||||||||    
T  36963470 tttcaaacttatcaca 36963455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 521
Target Start/End: Original strand, 10112624 - 10112665
Alignment:
Q  480 tttcccaccttatactttatacttttgaggtttttaaatttt 521  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10112624 tttcccaccttatactttatacttttgaggtttttaaatttt 10112665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 15234032 - 15233999
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttag 15233999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 43040849 - 43040882
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  43040849 tactccctccattccttttcttttgatgttttag 43040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 43041127 - 43041094
Alignment:
Q  172 atactccctccattccttttcttttgatgtttta 205  Q
    ||||||||||||||||||||||||||||||||||    
T  43041127 atactccctccattccttttcttttgatgtttta 43041094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 44104546 - 44104578
Alignment:
Q  173 tactccctccattccttttcttttgatgtttta 205  Q
    |||||||||||||||||||||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgtttta 44104578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 35793184 - 35793149
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35793184 atactccctccattctttttcttttgatgttttaga 35793149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 41252414 - 41252449
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||| ||||||||||    
T  41252414 atactccctccattccttttctttttatgttttaga 41252449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 10118729 - 10118695
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||| |||||||    
T  10118729 tactccctccattccttttcttttgatattttaga 10118695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 44104833 - 44104799
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  44104833 tactccctccgttccttttcttttgatgttttaga 44104799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 15233757 - 15233789
Alignment:
Q  175 ctccctccattccttttcttttgatgttttaga 207  Q
    ||||||| |||||||||||||||||||||||||    
T  15233757 ctccctctattccttttcttttgatgttttaga 15233789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 172 - 521
Target Start/End: Complemental strand, 33023462 - 33023112
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  33023462 atactccctccattccttttcttttgacgttttaggtgattgcataaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 33023363  T
Q  272 cccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 371  Q
    |||||| ||||||||||||         |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33023362 cccttattttactccatgatttttttttctcaaaattctaatttccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattt 33023263  T
Q  372 tctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaannnnnnnnnnnnactttcctgtatttccttcca-nnnnnnnncccaccaata 470  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||             |||||| |||||||||||||          |||||||||    
T  33023262 tctcaaacttatcacaaacaccttaaatccaacgtggaagttgtgcaattgttttttttttctttccggtatttccttccattttttttttccaccaata 33023163  T
Q  471 catttagtatttcccaccttatactttatacttttgaggtttttaaatttt 521  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33023162 catttagtatttcccaccatatactttatacttttgaggtttttaaatttt 33023112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 4055481 - 4055518
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4055481 taatactccctccattccttttcttttgatgttttaga 4055518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 47669116 - 47669153
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47669116 taatactccctccattccttttcttttgatgttttaga 47669153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 4817268 - 4817303
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  4817268 atactccctccattccttttcttttgatgttttaga 4817303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 37875724 - 37875830
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaa 269  Q
    |||||||||||||||| |||||||||||||||||||| |  | |||||| | ||||||||| |||||  ||||| ||||  ||||| ||||  |||||||    
T  37875724 taatactccctccatttcttttcttttgatgttttagctcttggcacaagtcttaaggaataattaatgtatagaaatatttgtat-gttttgactaaaa 37875822  T
Q  270 taccctta 277  Q
    || |||||    
T  37875823 tatcctta 37875830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 9831503 - 9831537
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgttttaga 9831537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 10737700 - 10737734
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttag 10737734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 18126851 - 18126885
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgttttaga 18126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 33020206 - 33020240
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgttttaga 33020240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 46220537 - 46220503
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  46220537 atactccctccattccttttcttttgatgttttag 46220503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 47669396 - 47669363
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttag 47669363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 48565096 - 48565063
Alignment:
Q  171 aatactccctccattccttttcttttgatgtttt 204  Q
    ||||||||||||||||||||||||||||||||||    
T  48565096 aatactccctccattccttttcttttgatgtttt 48565063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 1236071 - 1236103
Alignment:
Q  174 actccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttag 1236103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 1236307 - 1236273
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||| ||||||||||||||||||||    
T  1236307 tactccctccattcattttcttttgatgttttaga 1236273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 206
Target Start/End: Complemental strand, 9831777 - 9831747
Alignment:
Q  176 tccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||    
T  9831777 tccctccattccttttcttttgatgttttag 9831747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 46220259 - 46220293
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||| |||||||||||||||||||||||||    
T  46220259 tactccctctattccttttcttttgatgttttaga 46220293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 1749603 - 1749566
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  1749603 taatacttcctctattccttttcttttgatgttttaga 1749566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 8889720 - 8889687
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||| ||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttag 8889687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 172 - 419
Target Start/End: Complemental strand, 42793596 - 42793347
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaata 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  42793596 atactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataggaataattgtatggtttatactaaaata 42793497  T
Q  272 cccttactttactccatgannnnnnnnn--ctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaat 369  Q
    |||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42793496 cccttactttactccatgattttttttcttctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaactttcaat 42793397  T
Q  370 tttctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42793396 tttctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaa 42793347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 167 - 373
Target Start/End: Original strand, 41610367 - 41610574
Alignment:
Q  167 atctaatactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatacta 266  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||| |||||| ||||| ||||||||||    
T  41610367 atctaatactccctccattccttttcttttgatgttttaagtgattggacaaatattaaagaatcattaaattatatgaataattgtatggtttatacta 41610466  T
Q  267 aaatacccttactttactcc--atgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaactt 364  Q
    |||||||||||| |||||||  ||           ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  41610467 aaatacccttac-ttactccttatttttttttcttctcaaaattctaatctctttaattattgaaactcaccacacaaattgcatttattatttaaactt 41610565  T
Q  365 ccaattttc 373  Q
    |||||||||    
T  41610566 ccaattttc 41610574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 8724983 - 8724926
Alignment:
Q  173 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaat 230  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  8724983 tactcactccatttcttttcttttgatgttttagctgattgcacaagtattaaggaat 8724926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 12399223 - 12399189
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgttttaga 12399189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 23090298 - 23090332
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgttttaga 23090332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 29875232 - 29875198
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  29875232 atactccctccattccttttcttttgatgttttag 29875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 34208538 - 34208572
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgttttaga 34208572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 12398946 - 12398979
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttag 12398979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 23090576 - 23090543
Alignment:
Q  172 atactccctccattccttttcttttgatgtttta 205  Q
    ||||||||||||||||||||||||||||||||||    
T  23090576 atactccctccattccttttcttttgatgtttta 23090543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 42757805 - 42757838
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttag 42757838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 3077595 - 3077631
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3077595 aatactccctccattcattttcttttgatgttttaga 3077631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 4145694 - 4145728
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||||||||||||||||||||||    
T  4145694 tactcgctccattccttttcttttgatgttttaga 4145728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 29874954 - 29874988
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||| ||||||||||||||||||||    
T  29874954 tactccctccattctttttcttttgatgttttaga 29874988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 34208816 - 34208782
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||| ||||||||||||||    
T  34208816 atactccctccattcctttttttttgatgttttag 34208782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 42793040 - 42793074
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||||||||||||||||||||||    
T  42793040 tactcactccattccttttcttttgatgttttaga 42793074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 173 - 419
Target Start/End: Complemental strand, 19257137 - 19256894
Alignment:
Q  173 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaatac 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaattattaaattataggaataattgtatggtttatactaaaatac 19257038  T
Q  273 ccttactttactccatgannnnnnnnnctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaatttt 372  Q
    ||||||   |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19257037 ccttac---actccatgattttttttcctcaaaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaatttt 19256941  T
Q  373 ctcaaacttatcacaaacaccttaaatccaacgtgggagttgtgcaa 419  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  19256940 ctcaaacttatcacaaacaccttaaatccaacatgggagttgtgcaa 19256894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 51830715 - 51830776
Alignment:
Q  187 cttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaata 248  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  51830715 cttttcttttgatgttttagttgattgcacaagtattaaggaatcattaaaatataggaata 51830776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 19256183 - 19256220
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19256183 taatactccctccattccttttcttttgatgttttaga 19256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 30469450 - 30469411
Alignment:
Q  168 tctaatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  30469450 tctaatactcccttcattccttttcttttgatgttttaga 30469411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 36016278 - 36016313
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  36016278 atactccctccattccttttcttttgatgttttaga 36016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 8956054 - 8956019
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||| |||||||||||||||    
T  8956054 atactccctccattcctttttttttgatgttttaga 8956019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 45590741 - 45590776
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||| ||||||||||||||||||||    
T  45590741 atactccctccattcattttcttttgatgttttaga 45590776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 206
Target Start/End: Original strand, 8955779 - 8955809
Alignment:
Q  176 tccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttag 8955809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 49162366 - 49162332
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||| ||||||||||||||||||    
T  49162366 atactccctccattccctttcttttgatgttttag 49162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 39481900 - 39481937
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  39481900 taatattccctccatttcttttcttttgatgttttaga 39481937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 45591019 - 45590986
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||| |||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttag 45590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 33288684 - 33288648
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  33288684 aatactccctccatttcttttcttttgatattttaga 33288648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 39482138 - 39482106
Alignment:
Q  174 actccctccattccttttcttttgatgttttag 206  Q
    |||||||||||| ||||||||||||||||||||    
T  39482138 actccctccatttcttttcttttgatgttttag 39482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 173 - 280
Target Start/End: Complemental strand, 29723414 - 29723307
Alignment:
Q  173 tactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaatac 272  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgttttaggtgattgcacaaatattaaggaatcattaaattataagaataattgtatggtttatactaaaatac 29723315  T
Q  273 ccttactt 280  Q
    ||||||||    
T  29723314 ccttactt 29723307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 43706440 - 43706348
Alignment:
Q  188 ttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaatacccttactt 280  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    
T  43706440 ttttttttttatgttttagatgattgcacaaatattaaggaatcattaaattataagaataattatatggtttatactaaaatacccttactt 43706348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 33379003 - 33379064
Alignment:
Q  187 cttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaata 248  Q
    |||||||||||||||||||  ||||||||||| ||||||| |||||||||| ||||||||||    
T  33379003 cttttcttttgatgttttaagtgattgcacaagtattaagaaatcattaaagtataggaata 33379064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 4405388 - 4405353
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||||    
T  4405388 aatactccctccattccttttcttttgatgttttag 4405353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 29427442 - 29427407
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgttttaga 29427407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 29890824 - 29890859
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||||    
T  29890824 aatactccctccattccttttcttttgatgttttag 29890859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 43701550 - 43701585
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  43701550 atactccctccattccttttcttttgatgttttaga 43701585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 6387969 - 6387935
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  6387969 tactccctccattccttttcttttgatgttttaga 6387935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 17904163 - 17904197
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgttttaga 17904197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 26770179 - 26770213
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgttttaga 26770213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 37179608 - 37179574
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgttttaga 37179574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 46467612 - 46467578
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgttttaga 46467578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 17904440 - 17904407
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttag 17904407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 37179331 - 37179364
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttag 37179364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 46467334 - 46467367
Alignment:
Q  172 atactccctccattccttttcttttgatgtttta 205  Q
    ||||||||||||||||||||||||||||||||||    
T  46467334 atactccctccattccttttcttttgatgtttta 46467367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 6086869 - 6086810
Alignment:
Q  16 aatttttctctaaaatatattatagttgaaaacagat--caaatataatcattcttggat 73  Q
    |||||||||| |||||| |||||||||||||||||||  || |||| |||||||||||||    
T  6086869 aatttttctccaaaatacattatagttgaaaacagatcacagatattatcattcttggat 6086810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 29891103 - 29891071
Alignment:
Q  173 tactccctccattccttttcttttgatgtttta 205  Q
    |||||||||||||||||||||||||||||||||    
T  29891103 tactccctccattccttttcttttgatgtttta 29891071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 33379244 - 33379210
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||| |||||||||||||||||||||    
T  33379244 tactccctccatttcttttcttttgatgttttaga 33379210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 4405108 - 4405141
Alignment:
Q  172 atactccctccattccttttcttttgatgtttta 205  Q
    |||||||||||||| |||||||||||||||||||    
T  4405108 atactccctccatttcttttcttttgatgtttta 4405141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 6387692 - 6387725
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||| |||||||||||||||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttag 6387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 26770457 - 26770424
Alignment:
Q  172 atactccctccattccttttcttttgatgtttta 205  Q
    ||||||||||||||| ||||||||||||||||||    
T  26770457 atactccctccattcattttcttttgatgtttta 26770424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 49319715 - 49319623
Alignment:
Q  188 ttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattataggaataactgtatagtttatactaaaatacccttactt 280  Q
    |||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||    
T  49319715 tttttttttgatgttttaggtgattgcacacatattaaggaatcattaaattatagaaataattgtatggtttatactaaaatacccttactt 49319623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 46878895 - 46878813
Alignment:
Q  304 aaattctaatctccttaattattgaaactcaccacacaaactgcatttattatttaaacttccaattttctcaaacttatcaca 387  Q
    ||||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||    
T  46878895 aaattctaatctccttagttattggcactcaccacacaaattgcattta-tatttaaacttccaatttcctcaaacttatcaca 46878813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 1352275 - 1352239
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||||    
T  1352275 aatactccctccattccttttcttttgatgttttaga 1352239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 29014687 - 29014723
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||||    
T  29014687 taatactccctccattccttttcttttgatgttttag 29014723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 39528743 - 39528783
Alignment:
Q  167 atctaatactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39528743 atctactactccctccattccttttcttttgatgttttaga 39528783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 29371816 - 29371781
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  29371816 atactccctccattccttttcttttgatgttttaga 29371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 46879019 - 46878980
Alignment:
Q  166 tatctaatactccctccattccttttcttttgatgtttta 205  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  46879019 tatctattactccctccattccttttcttttgatgtttta 46878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 18996967 - 18997001
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgttttaga 18997001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 18999506 - 18999540
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgttttaga 18999540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 32677754 - 32677720
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgttttaga 32677720  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 36737833 - 36737867
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  36737833 atactccctccattccttttcttttgatgttttag 36737867  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 38855595 - 38855561
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  38855595 atactccctccattccttttcttttgatgttttag 38855561  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 39518685 - 39518651
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  39518685 atactccctccattccttttcttttgatgttttag 39518651  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 41349370 - 41349404
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  41349370 atactccctccattccttttcttttgatgttttag 41349404  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 41349648 - 41349614
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgttttaga 41349614  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 1351996 - 1352029
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttag 1352029  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 18997244 - 18997211
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttag 18997211  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 18999783 - 18999750
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttag 18999750  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 39529026 - 39528993
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttag 39528993  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 55365907 - 55365942
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||| ||||||||||||||||||||||||||    
T  55365907 atactcccttcattccttttcttttgatgttttaga 55365942  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 28228436 - 28228470
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||||||||||||||||||||||    
T  28228436 tactctctccattccttttcttttgatgttttaga 28228470  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 39807256 - 39807222
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||| ||||||||||||||||||||||||||||||    
T  39807256 tacttcctccattccttttcttttgatgttttaga 39807222  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 46878979 - 46878945
Alignment:
Q  185 tccttttcttttgatgttttagatgattgcacaaa 219  Q
    |||||||||||||||||||||| ||||||||||||    
T  46878979 tccttttcttttgatgttttaggtgattgcacaaa 46878945  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 49319347 - 49319381
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||| ||||||||||||||||||||||||||||||    
T  49319347 tacttcctccattccttttcttttgatgttttaga 49319381  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 22157255 - 22157292
Alignment:
Q  170 taatactccctccattccttttcttttgatgttttaga 207  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  22157255 taatattccctccatttcttttcttttgatgttttaga 22157292  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 29371538 - 29371571
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||| |||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttag 29371571  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 32677477 - 32677510
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||| |||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttag 32677510  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 39806979 - 39807012
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||| |||||||||||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttag 39807012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 21974147 - 21974183
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||| |||||||||| |||||||||||||||||||||    
T  21974147 aatattccctccatttcttttcttttgatgttttaga 21974183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 21996578 - 21996614
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||| |||||||||| |||||||||||||||||||||    
T  21996578 aatattccctccatttcttttcttttgatgttttaga 21996614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 36738113 - 36738077
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||| | ||||||||||||||||||||||||||    
T  36738113 aatactccattcattccttttcttttgatgttttaga 36738077  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 27312395 - 27312359
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||||    
T  27312395 aatactccctccattccttttcttttgatgttttaga 27312359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 32274433 - 32274468
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  32274433 atactccctccattccttttcttttgatgttttaga 32274468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 27312113 - 27312147
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||||||||||||||||||||||||    
T  27312113 atactccctccattccttttcttttgatgttttag 27312147  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 29302548 - 29302514
Alignment:
Q  173 tactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgttttaga 29302514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 34045060 - 34045130
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattata 242  Q
    |||||| ||| ||| ||||| || ||||||||||| ||||||||||| ||||||| |||||||||| ||||    
T  34045060 atactcactctatttcttttattgtgatgttttagctgattgcacaagtattaagaaatcattaaagtata 34045130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 8504733 - 8504766
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||||||||||||||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttag 8504766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 12174693 - 12174734
Alignment:
Q  166 tatctaatactccctccattccttttcttttgatgttttaga 207  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  12174693 tatcttatactccctccattccttttcttttaatgttttaga 12174734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 7156503 - 7156468
Alignment:
Q  172 atactccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||||| |||||||||||||||||||||    
T  7156503 atactccctccatttcttttcttttgatgttttaga 7156468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 2543359 - 2543325
Alignment:
Q  172 atactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||||| |||||||||||||||||||    
T  2543359 atactccctccattcgttttcttttgatgttttag 2543325  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 31170989 - 31171059
Alignment:
Q  172 atactccctccattccttttcttttgatgttttagatgattgcacaaatattaaggaatcattaaattata 242  Q
    |||||||||||||| ||||||||||||| |||||| |  | |||||||| ||||||| | |||||| ||||    
T  31170989 atactccctccatttcttttcttttgatattttagttcttagcacaaattttaaggagtaattaaagtata 31171059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 18741947 - 18741980
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    ||||||||||||| ||||||||||||||||||||    
T  18741947 tactccctccatttcttttcttttgatgttttag 18741980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 32274711 - 32274678
Alignment:
Q  173 tactccctccattccttttcttttgatgttttag 206  Q
    |||||||||||||| |||||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttag 32274678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 8504977 - 8504945
Alignment:
Q  175 ctccctccattccttttcttttgatgttttaga 207  Q
    |||||||||||| ||||||||||||||||||||    
T  8504977 ctccctccattcattttcttttgatgttttaga 8504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 18742223 - 18742191
Alignment:
Q  173 tactccctccattccttttcttttgatgtttta 205  Q
    ||||||||||||| |||||||||||||||||||    
T  18742223 tactccctccatttcttttcttttgatgtttta 18742191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 29452822 - 29452786
Alignment:
Q  171 aatactccctccattccttttcttttgatgttttaga 207  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  29452822 aatactccctccatttcttttcttctgatgttttaga 29452786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 34045280 - 34045316
Alignment:
Q  307 ttctaatctccttaattattgaaactcaccacacaaa 343  Q
    ||||||||||||||||||| || ||||||||||||||    
T  34045280 ttctaatctccttaattatcgacactcaccacacaaa 34045316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 44903 - 44862
Alignment:
Q  165 ttatctaatactccctccattccttttcttttgatgttttag 206  Q
    |||| |||||||| || |||||||||||||||||||||||||    
T  44903 ttatttaatactctctacattccttttcttttgatgttttag 44862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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