View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_17 (Length: 519)
Name: NF5921_low_17
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 33 - 301
Target Start/End: Complemental strand, 36065064 - 36064796
Alignment:
| Q |
33 |
atacatacatacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtattactctctcctttta |
132 |
Q |
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| T |
36065064 |
atacatacatacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtattactctctcctttta |
36064965 |
T |
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| Q |
133 |
gccttgatccatgaggttccttgattgggatttgcaccacccttttctgtatggctcgcctgctttaattaacaatatatacaaaaacaattcacattat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36064964 |
gccttgatccatgaggttccttgattgggatttgcaccacccttttctgtatggctcgcctgctttaattaacaatatatacaaaaacaattcacattat |
36064865 |
T |
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| Q |
233 |
tatttgtaattttataacatctcaagatcggattgagtagtgggaaattatggtcattaatcgttagga |
301 |
Q |
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| T |
36064864 |
tatttgtaattttataacatctcaagatcggattgagtagtgggaaattatagtcattaatcgttagga |
36064796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 306 - 503
Target Start/End: Complemental strand, 36064763 - 36064567
Alignment:
| Q |
306 |
taattagtataagtgtgtgtacagtgtactaaccttttcttagatgatgaagaagagtgggaagtgactgagccatcgatgttaaatgaggtggaagaag |
405 |
Q |
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| T |
36064763 |
taattagtataagtgtgtgcactgc-tactaaccttttcttagatgatgaagaagagtgggaagtgactgagccatcgatgttaaatgaggtggaagaag |
36064665 |
T |
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| Q |
406 |
gagtggaatcttgagatatgtcagtcaagtcttcctcttggtgagtatgtgggtttttgaattttcttttcattttcttgggatttggagcaggttag |
503 |
Q |
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| T |
36064664 |
gagtggaatcttgagatatgtcagtcaagtcttcctcttggtgagtatgtgggtttttgaattttcttttcattttcttgggatttggagcaggttag |
36064567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 5190528 - 5190450
Alignment:
| Q |
41 |
atacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaaggtggtgtatta |
119 |
Q |
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|||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||| |||||| |
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| T |
5190528 |
ataccttggataaggggaacctttgatgggtttctgaccatactttctccaagcccatgaatcagacggtggagtatta |
5190450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 12166315 - 12166382
Alignment:
| Q |
42 |
tacctgggataaggcgaacctttgatgggtttctggccatattttctccatgcccatgaatctgaagg |
109 |
Q |
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| T |
12166315 |
taccttggataaggtgaacctttaataggcttctgaccatattttctccaagcccacaaatctgaagg |
12166382 |
T |
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