View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_18 (Length: 517)
Name: NF5921_low_18
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 36531301 - 36531123
Alignment:
| Q |
7 |
gagagaagaagaaccactcgttatctgattgaatgaatgatttggctggtttgaaacaagtattattcagtcagcttacaaattttctgctgagttaatt |
106 |
Q |
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| T |
36531301 |
gagagaagaagaaccactcgttatctgattgaatgaatgatttggctggtttgaaacaagtattatttagtcagcttacaaattttctgctgagttaatt |
36531202 |
T |
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| Q |
107 |
ggataaatttaaacttcaaacatgcatagcaattttaaattgtgtttatcttctaaacaacatttctcaaaatattacc |
185 |
Q |
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| T |
36531201 |
ggataaatttaaacttcaaacatgcatagcaattttaaattgtgtttatcttctaaacaacatttctcaaattattacc |
36531123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 184 - 376
Target Start/End: Complemental strand, 36531013 - 36530832
Alignment:
| Q |
184 |
ccatcgggggtcaacataataatgagaggcataaatggaccctacattaaattcatacaatgcagtaattagatgcaagtatccaagaaagtcctctgtt |
283 |
Q |
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| T |
36531013 |
ccatggggggtcaacataataatgagaggcataaatggaccctacattaaattcatacaatgcagtaattagatgcaagtatccaagaaagtcctctgtt |
36530914 |
T |
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| Q |
284 |
tgtacacttatatagtgatttatttgtctatgacttattcacacacaacatagaaataagaatcaccccaggttccaccaacatacatatttt |
376 |
Q |
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| T |
36530913 |
tgtacacttatatagtgatttatttg-----------ttcacacacaacatagaaataagaatcaccccaggttccaccaacgtacatatttt |
36530832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 372 - 502
Target Start/End: Complemental strand, 36530812 - 36530682
Alignment:
| Q |
372 |
attttcaatgctcaaaacacgtggtttcatttttcatatgttgaaacttggtatggtatcacggtggatatgtcataatcacaacgacgtgattatggta |
471 |
Q |
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| T |
36530812 |
attttcaatgctcaaaacacgtggtttcatttttcatatgttgaaacttggtatggtatcaaggtggatatgtcataatcacaacgacgtgattatggta |
36530713 |
T |
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| Q |
472 |
tcacaccgtgataccaacacgggctagggtt |
502 |
Q |
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| T |
36530712 |
tcacaccgtgataccaacacgggctagggtt |
36530682 |
T |
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