View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_19 (Length: 510)
Name: NF5921_low_19
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Complemental strand, 35829704 - 35829218
Alignment:
| Q |
17 |
actaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaaggattagaattataatggttttggtaaatgaaaatatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829704 |
actaatgaagttgtaatagaattgttgcagcctgagtcagctttgtaaagtataaaactaaggattagaattataatggttttggtaaatgaaaatatga |
35829605 |
T |
|
| Q |
117 |
catgttttgagaaactaacaagttttaaaaccatgannnnnnnn-cttcttataaaaattgcttaataagagagggggttgaatactgttctgctataag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829604 |
catgttttgagaaactaacaagttttaaaaccatgatttttttttcttcttataaaaattgcttaataagagagggggttgaatactgttctgctataag |
35829505 |
T |
|
| Q |
216 |
gaaatgtttgatgcaaatgaaaagttgagaagacaatttgaagaggtcaccaccttttataggcaaacctgatagtctgatggaggtgtccttgaggtgt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35829504 |
gaaatgtttgatgcaaatgaaaagttgagaagacaatttgaagaggtcaccaccttttataggcaaacctgatagtctgatggaggtgtccttgaggtgt |
35829405 |
T |
|
| Q |
316 |
gtttgatgcaccttgttatggtaacaaatttttcatcatgtgtatattggtcatagaaacaaagtacaagtaaaataa--nnnnnnnnccccacaagttc |
413 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |
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| T |
35829404 |
gtttgatgcaccttgtaatggtaacaaatttttcatcatgtgtatattggtcatagatacaaagtacaagtaaaataattattatttttcccataagttc |
35829305 |
T |
|
| Q |
414 |
cattcgcgccggagtaatcatatccaaagtgtaccggaaattaaatgtgagtacctctttcgattgtgtctttttcattctcctttg |
500 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35829304 |
cattcgcgccggagtaatcatatccaaaatgtaccggaaattaaatgtcagtacctctttcgattgtgtctttttcattctcctttg |
35829218 |
T |
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