View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_20 (Length: 503)
Name: NF5921_low_20
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 83 - 473
Target Start/End: Complemental strand, 9243368 - 9242978
Alignment:
| Q |
83 |
atgtagtcgtggagtgtatcaagatcaaggtttagagtggtcgaagtatcatcttgattatgctcccataagcaagtatttcaaatgtgttatatgatcc |
182 |
Q |
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| T |
9243368 |
atgtagtcgcggagtgtatcaagatcaaggtttagagtggtcgaagtatcatcttgattctgctcccataagtaagtatttcggatgtgttatatgttcc |
9243269 |
T |
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| Q |
183 |
aaaggatatatgagaagcaagttgtagtattatcatccaaacttgcaagaacggaaaatatagttgtagcaaaatttccattactttgaatatggtatca |
282 |
Q |
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| T |
9243268 |
aaaggatagattagaagcaagctctagtgttatcatccaaacttgcatgagcggaaaatatagttgtagaaaaacttcgattactttgaatatggtatca |
9243169 |
T |
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| Q |
283 |
attctattccataaatttgcctctttccaacaattagtagcgtaagcacactcaagaaagttatgcatatcatccacaacataaattgagtacctaacat |
382 |
Q |
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| T |
9243168 |
attctactccataaatttgtctctttccaacaattagtagcataagcacactcaagaaagttatgcatatcatcatcaacataactggagtacctaacat |
9243069 |
T |
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| Q |
383 |
aatcagattgacaattaatgcctcatttatataaatttaaaagagtaggaaagcaacaatggagtaatctccaataaaaatgatttatctt |
473 |
Q |
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| T |
9243068 |
aatcagattgacagttaatgcataatttatataaattcaaaagagtaggaattcaacaatgaagtaatctccaacaaaaaggatttatctt |
9242978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 9243460 - 9243395
Alignment:
| Q |
15 |
atcaacattacatttcaactagttcgtactaggctttttccaagctagaattggcggtgctttgcaag |
82 |
Q |
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| T |
9243460 |
atcaacattacatttcaactagtt--tactaggctttttccaagttagaattggcggtgctttgcaag |
9243395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 3879861 - 3879794
Alignment:
| Q |
15 |
atcaacattacatttcaactagttcgtactaggctttttccaagctagaattggcggtgctttgcaag |
82 |
Q |
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| T |
3879861 |
atcaacattacattttaacaagttaatactaggcttcttccaagctagagtggccggtgctttgcaag |
3879794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 3879630 - 3879515
Alignment:
| Q |
287 |
tattccataaatttgcctctttccaacaattagtagcgtaagcacactcaagaaagttatgcatatcatccacaacataaattgagtacctaacataatc |
386 |
Q |
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| T |
3879630 |
tattccataaatttgcctcatttcaacagttaacaacataagcacactcaagaaagatatgaatctcatcttcaacagtatgggagcacctaacacaatt |
3879531 |
T |
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| Q |
387 |
agattgacaattaatg |
402 |
Q |
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| T |
3879530 |
agattgacatttaatg |
3879515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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