View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_21 (Length: 474)

Name: NF5921_low_21
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_21
NF5921_low_21
[»] chr7 (3 HSPs)
chr7 (18-238)||(28286963-28287183)
chr7 (274-463)||(28286768-28286951)
chr7 (72-132)||(10476014-10476074)
[»] chr1 (2 HSPs)
chr1 (75-154)||(21937922-21938001)
chr1 (82-160)||(9001589-9001667)
[»] chr4 (2 HSPs)
chr4 (75-135)||(11314442-11314502)
chr4 (75-135)||(27918508-27918568)
[»] chr6 (1 HSPs)
chr6 (83-129)||(6530063-6530109)
[»] chr5 (3 HSPs)
chr5 (75-160)||(14045177-14045262)
chr5 (91-127)||(39799759-39799795)
chr5 (82-154)||(40279683-40279755)
[»] chr8 (1 HSPs)
chr8 (75-135)||(5374516-5374576)
[»] chr3 (1 HSPs)
chr3 (83-135)||(25630010-25630062)
[»] chr2 (1 HSPs)
chr2 (75-135)||(42063990-42064050)


Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 28287183 - 28286963
Alignment:
Q  18 aaaaccgcagaccacacgttgtcaacgatgtcgcaactaaagaggaggtgtcgcaataaataatcattaatgattcattgatattataaaataatgtata 117  Q
    |||||||||||||||| |||| ||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28287183 aaaaccgcagaccacatgttgccaaaggtgtcgcaactaaagaggaggtgtcgcaacaaataatcattaatgattcattgatattataaaataatgtata 28287084  T
Q  118 atttgagacaaacaaattctcttaaaatggcatataacttagacggatagaatacatgatatcaattttgtctaaaagtgtcaaatttatggtttcaaag 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28287083 atttgagacaaacaaattctcttaaaatgacatataacttagacggatagaatacatgatatcaattttgtctaaaagtgacaaatttatggtttcaaag 28286984  T
Q  218 agtttgaatcataatccaaca 238  Q
    | |||||||||||||||||||    
T  28286983 aatttgaatcataatccaaca 28286963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 274 - 463
Target Start/End: Complemental strand, 28286951 - 28286768
Alignment:
Q  274 aagaatataaaatgaattttataaaaccaaaagagcttcacattcacacaaagagtgttagnnnnnnnnnggttacccataaagaatgttagttaagact 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         ||||||||||||||||||||||||||||||    
T  28286951 aagaatataaaatgaattttataaaaccaaaagagcttcacattcacataaagagtgttagtttttttttggttacccataaagaatgttagttaagact 28286852  T
Q  374 caagagtaattacaattacagacaaaacagaacaaaaccataataattagaagcatttgannnnnnnncctaaaacttgttgttccctat 463  Q
    |||||||      |||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  28286851 caagagt------aattacagacaaaacagaacaaaaccataataattagaagcatttgattttttttcctaaaacttgttgttccctat 28286768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 10476014 - 10476074
Alignment:
Q  72 aataaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaa 132  Q
    |||||||||||||||||||| |||||||||  |||||| |  ||||||||  |||||||||    
T  10476014 aataaataatcattaatgatacattgatatcgtaaaatgacatataatttatgacaaacaa 10476074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 21938001 - 21937922
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaattctcttaaaatggcatataa 154  Q
    |||||| ||| |||||||||||||||||||||||| |  ||||||||||| |||| ||||| | ||| |||| |||||||    
T  21938001 aaataagcatcaatgattcattgatattataaaatgacatataatttgaggcaaataaattttgttagaatgacatataa 21937922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 9001667 - 9001589
Alignment:
Q  82 cattaatgattcattgatattataaaataatgtataatttgagacaaacaaattctcttaaaatggcatataacttaga 160  Q
    ||||||||||||||||||||| |||| | |  |||||||| | ||||||||||| | |||||||| ||||||| |||||    
T  9001667 cattaatgattcattgatattgtaaagtgacatataatttaaaacaaacaaattttgttaaaatgacatataatttaga 9001589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 11314442 - 11314502
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaatt 135  Q
    |||||| |||||||||||| |||||||| |||||| || |||||||||| ||||| |||||    
T  11314442 aaataaacattaatgattctttgatattgtaaaatgatatataatttgaaacaaataaatt 11314502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 27918508 - 27918568
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaatt 135  Q
    |||||| ||||||||||||||||||||| |||||| |  |||||||||| | |||||||||    
T  27918508 aaataagcattaatgattcattgatattgtaaaatgacatataatttgaaagaaacaaatt 27918568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 6530109 - 6530063
Alignment:
Q  83 attaatgattcattgatattataaaataatgtataatttgagacaaa 129  Q
    |||||||||| |||||||||||||||| || ||||| ||||||||||    
T  6530109 attaatgatttattgatattataaaatgatatataaattgagacaaa 6530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 14045177 - 14045262
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaattctcttaaaatggcatataacttaga 160  Q
    |||||| ||||||| ||| ||||||||| |||||| |  |||||||||||||||| ||||| | ||| |||| |  ||||||||||    
T  14045177 aaataagcattaattatttattgatattgtaaaatgacatataatttgagacaaataaattttattagaatgaccaataacttaga 14045262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 39799759 - 39799795
Alignment:
Q  91 ttcattgatattataaaataatgtataatttgagaca 127  Q
    ||||||||||||||||||| || ||||||||||||||    
T  39799759 ttcattgatattataaaatgatatataatttgagaca 39799795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 40279683 - 40279755
Alignment:
Q  82 cattaatgattcattgatattataaaataatgtataatttgagacaaacaaattctcttaaaatggcatataa 154  Q
    ||||||||||||||| ||||| |||| | || |||||||||| | ||||||||| | ||| |||| |||||||    
T  40279683 cattaatgattcattaatattgtaaagtgatatataatttgaaataaacaaattttgttagaatgacatataa 40279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 5374576 - 5374516
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaatt 135  Q
    |||||| ||||||||||||| ||||||| |||||| |  |||||||||  |||||||||||    
T  5374576 aaataaacattaatgattcaatgatattgtaaaatgacatataatttggaacaaacaaatt 5374516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 25630062 - 25630010
Alignment:
Q  83 attaatgattcattgatattataaaataatgtataatttgagacaaacaaatt 135  Q
    ||||||||||| |||||||| ||||||||  |||||||| ||||||| |||||    
T  25630062 attaatgattctttgatattgtaaaataacatataatttaagacaaataaatt 25630010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 42064050 - 42063990
Alignment:
Q  75 aaataatcattaatgattcattgatattataaaataatgtataatttgagacaaacaaatt 135  Q
    |||||| |||| ||||||||||| ||||||||||| |  |||||||| ||| |||||||||    
T  42064050 aaataaacattgatgattcattggtattataaaatgacttataatttaagataaacaaatt 42063990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University