View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_24 (Length: 466)

Name: NF5921_low_24
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_24
NF5921_low_24
[»] chr7 (4 HSPs)
chr7 (4-286)||(30250233-30250515)
chr7 (353-450)||(30250069-30250166)
chr7 (186-246)||(25629357-25629417)
chr7 (359-395)||(25628917-25628953)
[»] chr2 (4 HSPs)
chr2 (97-262)||(29351880-29352046)
chr2 (154-260)||(34325716-34325822)
chr2 (360-407)||(29352142-29352189)
chr2 (411-450)||(34325571-34325610)
[»] chr8 (3 HSPs)
chr8 (199-260)||(4028366-4028427)
chr8 (411-450)||(4028164-4028203)
chr8 (360-407)||(4028221-4028268)
[»] chr5 (2 HSPs)
chr5 (359-407)||(31778198-31778246)
chr5 (359-395)||(30651864-30651900)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 30250515 - 30250233
Alignment:
Q  4 gagtgagatgaacaatgcagctattaaatcaaatgacaaacaatatagcatattcaaactaatgcacaatttactcgctcatattcaaaaccatacaaaa 103  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30250515 gagtgaaataaacaatgcagctattaaatcaaatgacaaacaatatagcatattcaaactaatgcacaatttactcgctcatattcaaaaccatacaaaa 30250416  T
Q  104 cgaagactttactgagactcattctttgtaatatatgtttcctatagttgagttggatcattcatttgcattctgcgaagcaatcagttaatcatctttc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30250415 cgaagactttactgagactcattctttgtaatatatgtttcctatagttgagttggatcattcatttgcattctgcaaagcaatcagttaatcatctttc 30250316  T
Q  204 tttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatagctatagaaacataacagactttcg 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30250315 tttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatagctatagaaacataacagactttcg 30250233  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 30250166 - 30250069
Alignment:
Q  353 ctacatatatgataatgagtgattgacaaaccactttttattactcaaggtaaaaatgatcataaatctcttagttgaaaacaagaaaaccaactaat 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30250166 ctacatatatgataatgagtgattgacaaaccactttttattactcaaggtaaaaatgatcataaatctcttagttgaaaacaagaaaaccaactaat 30250069  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 25629417 - 25629357
Alignment:
Q  186 atcagttaatcatctttctttaaagcatttcaaataacttgatattttcatcaagtcaaac 246  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  25629417 atcagttaatcatcttgctttaaagcatttcaaataacttgatatcttcatcaagtcaaac 25629357  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 25628953 - 25628917
Alignment:
Q  359 atatgataatgagtgattgacaaaccactttttatta 395  Q
    ||||||||||  |||||||||||||||||||||||||    
T  25628953 atatgataattggtgattgacaaaccactttttatta 25628917  T

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Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 29351880 - 29352046
Alignment:
Q  97 tacaaaacgaagactttactgagactcattctttgtaatatatgtttcctatagttgagtt-ggatcattcatttgcattctgcgaagcaatcagttaat 195  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||     
T  29351880 tacaaaatcaagactttactgagactccttctttgtaatatatgtttcctatagttgagtttggatcattcatttgcattcggcaaaacaatcagttaaa 29351979  T
Q  196 catctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaatag 262  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29351980 catctttgtttgaagcatttcaaataacatgatattttcatcaagtcaaacgtatactttcaaatag 29352046  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 154 - 260
Target Start/End: Complemental strand, 34325822 - 34325716
Alignment:
Q  154 agttggatcattcatttgcattctgcgaagcaatcagttaatcatctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatact 253  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34325822 agttggatcattcatttgcattctgcaaaacaatcagttaatcatctttctttaaggcatttcaaataacttgatattttcatcaagtcaaacgtatact 34325723  T
Q  254 ttcaaat 260  Q
    |||||||    
T  34325722 ttcaaat 34325716  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 29352142 - 29352189
Alignment:
Q  360 tatgataatgagtgattgacaaaccactttttattactcaaggtaaaa 407  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  29352142 tatgataatgagtgatttacaaaccactttttattattcaaggtaaaa 29352189  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 34325610 - 34325571
Alignment:
Q  411 atcataaatctcttagttgaaaacaagaaaaccaactaat 450  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  34325610 atcataaatctcttagttgagaacaagaaaaccaactaat 34325571  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 4028427 - 4028366
Alignment:
Q  199 ctttctttaaagcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaat 260  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028427 ctttctttaaggcatttcaaataacttgatattttcatcaagtcaaacgtatactttcaaat 4028366  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 4028203 - 4028164
Alignment:
Q  411 atcataaatctcttagttgaaaacaagaaaaccaactaat 450  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  4028203 atcataaatctcttagttgagaacaagaaaaccaactaat 4028164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 407
Target Start/End: Complemental strand, 4028268 - 4028221
Alignment:
Q  360 tatgataatgagtgattgacaaaccactttttattactcaaggtaaaa 407  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  4028268 tatgataatgaatgattgacaaaccactttttattatccaaggtaaaa 4028221  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 31778246 - 31778198
Alignment:
Q  359 atatgataatgagtgattgacaaaccactttttattactcaaggtaaaa 407  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  31778246 atatgataatgggtgattgacaaaccactttttattattcaagataaaa 31778198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 30651900 - 30651864
Alignment:
Q  359 atatgataatgagtgattgacaaaccactttttatta 395  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  30651900 atatgataatgggtgattgataaaccactttttatta 30651864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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