View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_low_25 (Length: 464)
Name: NF5921_low_25
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 4109965 - 4110256
Alignment:
| Q |
5 |
cacgacaagaacttaaacacagaacatctcaatggctagcaatccattgtcttcaaatgaataggattcaatgctctcaagacacactagtgtcatattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4109965 |
cacgacaagaacttaaacacagaacatctcaatggctagcaatccattgtcttcaaatgaataggattcaatgctctcaagacacactagtgtcatattt |
4110064 |
T |
|
| Q |
105 |
gacaaggtaatatattgtcacatagtttacttgttctgttcttcacacagaacaaaatgatcaagcattcacgcagcttaaataatcagcactaatctgc |
204 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4110065 |
gacaaggtagtatactgtcacatagtttacttgttccgtacttcacacagaacaaaatgatcaagcattcacgcagcttaaataatca-tactaatctgc |
4110163 |
T |
|
| Q |
205 |
atagtttatggcataaaacacaaataagtaacacctaatacacaaagtaactgaaaataacaaactaaaactaagcttttatctcattatata |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||| |
|
|
| T |
4110164 |
atagtttatggcataaaacacaaataagtaacacctaatacacaaagtaactgaaaataacaaaccaaaactaagcctttatcacatcatata |
4110256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 197 - 464
Target Start/End: Complemental strand, 4385063 - 4384800
Alignment:
| Q |
197 |
taatctgcatagtttatggcataaaacacaaataagtaacacctaatacacaaagtaactgaaaataacaaactaaaactaagcttttatctcattatat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4385063 |
taatctgcatagtttatggcataaaacacaaataagtaacacctaatacacaaagtaactgaaaataacaaactaaaactgagcttttatctcattatat |
4384964 |
T |
|
| Q |
297 |
agattaaaaatttattagggaaaaatatataggtggattacaagtttaattgatgatataaaaacttgaattacaagttagaactggtggtagactgatt |
396 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384963 |
agattaaaagtttattagggaaaa----ataggtggattacaagtttaattaatgatataaaaacttgaattacaagttagaactggtggtagactgatt |
4384868 |
T |
|
| Q |
397 |
gnnnnnnngttacacagggttcatttggaattgtttacaaagttgaatcaaaggtagcaacatcttgt |
464 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384867 |
gaaaaaaagttacacagggttcatttggaattgtttacaaagttgaatcaaaggtagcaacatcttgt |
4384800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 4385178 - 4385063
Alignment:
| Q |
5 |
cacgacaagaacttaaacacagaacatctcaatggctagcaatccattgtcttcaaatgaataggattcaatgctctcaagacacactagtgtcatattt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4385178 |
cacgacaagaacttaaacacagaacatctcaatggctagcaatccattgtcttcaaatgaataggattcaatgctctcaagacacactagtgtcatattt |
4385079 |
T |
|
| Q |
105 |
gacaaggtaatatatt |
120 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
4385078 |
gacaaggtagtatatt |
4385063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 4110360 - 4110409
Alignment:
| Q |
414 |
ggttcatttggaattgtttacaaagttgaatcaaaggtagcaacatcttgt |
464 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || | ||||||||||||| |
|
|
| T |
4110360 |
ggttcatttggaattgtttacaaaggtgaatcgaaag-agcaacatcttgt |
4110409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University