View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_27 (Length: 455)
Name: NF5921_low_27
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 2892137 - 2891693
Alignment:
| Q |
1 |
cttccaaaatcaacaacctttgctcaatcctcaccttctaaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaatacagaac |
100 |
Q |
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| T |
2892137 |
cttccaaaatcaacaacctttgctcaatcctgaccttctaaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaatacagaac |
2892038 |
T |
|
| Q |
101 |
caagttccactttcacattttgtccaatttcaagaccaacttccacaagtaaattccaatgttagtactaccacattcactaccccttgtgtttcttcat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2892037 |
caagttccactttcacattttctccaatttcaagaccaacttccacaagtaaattccaatgttattactaccacattcactaccccttgtgtttcttcat |
2891938 |
T |
|
| Q |
201 |
tgccaaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgggtttgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2891937 |
tgccaaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgggtttgg |
2891838 |
T |
|
| Q |
301 |
tctaagtaccttaaaagaggaggattatatccctcaattatcaaactataataattattatggttctgataatcaaaatcttatttactatcaaacttca |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2891837 |
tctaagtaacttaaaagaggaggattatatccctcaattatcaaactataataattattatggttctgataatcaaaatcttatgtactatcaaacttca |
2891738 |
T |
|
| Q |
401 |
aatcaacttctatcaacaccatcatcttctagtcccacacctttg |
445 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
2891737 |
aatcaacttctatcaacaccgtcatcttctagtcccacacctttg |
2891693 |
T |
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