View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_32 (Length: 434)

Name: NF5921_low_32
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_32
NF5921_low_32
[»] chr8 (17 HSPs)
chr8 (19-422)||(5836425-5836828)
chr8 (246-375)||(5884382-5884511)
chr8 (246-338)||(31449429-31449522)
chr8 (298-377)||(17953570-17953648)
chr8 (246-349)||(44925463-44925566)
chr8 (160-211)||(5884548-5884599)
chr8 (286-337)||(17020812-17020863)
chr8 (284-335)||(17026390-17026441)
chr8 (286-337)||(17551249-17551300)
chr8 (284-335)||(17556882-17556933)
chr8 (284-335)||(40125477-40125528)
chr8 (299-351)||(1910551-1910603)
chr8 (289-368)||(7002084-7002161)
chr8 (289-337)||(13799457-13799505)
chr8 (246-349)||(15951093-15951197)
chr8 (286-350)||(18875971-18876035)
chr8 (292-336)||(33417010-33417054)
[»] chr7 (6 HSPs)
chr7 (247-335)||(3880443-3880532)
chr7 (286-377)||(8268717-8268807)
chr7 (286-350)||(16372845-16372910)
chr7 (299-377)||(4579921-4579998)
chr7 (286-336)||(4930684-4930734)
chr7 (286-351)||(25831990-25832055)
[»] chr3 (20 HSPs)
chr3 (286-350)||(48431940-48432004)
chr3 (286-368)||(20168819-20168899)
chr3 (286-349)||(757948-758011)
chr3 (247-349)||(29350691-29350793)
chr3 (245-338)||(8888367-8888461)
chr3 (285-330)||(1640522-1640567)
chr3 (292-368)||(17025691-17025765)
chr3 (250-349)||(18467676-18467775)
chr3 (285-336)||(4662572-4662623)
chr3 (286-349)||(46964460-46964523)
chr3 (286-332)||(12965470-12965516)
chr3 (286-348)||(25726357-25726419)
chr3 (299-349)||(55326227-55326276)
chr3 (246-338)||(3034080-3034173)
chr3 (246-338)||(3693055-3693148)
chr3 (246-338)||(8070115-8070208)
chr3 (292-349)||(18011766-18011823)
chr3 (299-348)||(18472459-18472507)
chr3 (286-350)||(2207329-2207392)
chr3 (286-346)||(35456544-35456604)
[»] chr5 (13 HSPs)
chr5 (20-75)||(19610347-19610402)
chr5 (299-375)||(23688521-23688595)
chr5 (246-338)||(36941829-36941922)
chr5 (299-377)||(9726349-9726425)
chr5 (284-335)||(39518861-39518912)
chr5 (284-335)||(39523500-39523551)
chr5 (299-376)||(40148322-40148397)
chr5 (299-349)||(37248397-37248447)
chr5 (246-338)||(36937075-36937168)
chr5 (286-350)||(6513497-6513561)
chr5 (246-349)||(26667725-26667828)
chr5 (246-349)||(26939322-26939425)
chr5 (246-349)||(29167513-29167616)
[»] chr4 (15 HSPs)
chr4 (246-377)||(19540721-19540852)
chr4 (286-350)||(32081708-32081772)
chr4 (299-349)||(3309609-3309659)
chr4 (286-377)||(19107034-19107123)
chr4 (246-346)||(51698373-51698474)
chr4 (286-350)||(1150949-1151013)
chr4 (246-335)||(48276200-48276291)
chr4 (286-349)||(5927799-5927861)
chr4 (286-349)||(42316212-42316275)
chr4 (286-348)||(8694166-8694227)
chr4 (286-348)||(16421491-16421553)
chr4 (286-351)||(13065384-13065449)
chr4 (286-377)||(31766296-31766385)
chr4 (286-335)||(33468587-33468636)
chr4 (286-377)||(15805222-15805311)
[»] scaffold0054 (1 HSPs)
scaffold0054 (286-350)||(25904-25968)
[»] chr1 (12 HSPs)
chr1 (246-349)||(16649176-16649279)
chr1 (241-351)||(39200298-39200409)
chr1 (286-348)||(27311369-27311431)
chr1 (286-351)||(2493459-2493524)
chr1 (246-338)||(3094526-3094619)
chr1 (298-377)||(47450820-47450898)
chr1 (286-350)||(19798583-19798647)
chr1 (292-351)||(28434222-28434281)
chr1 (288-330)||(9352950-9352992)
chr1 (286-335)||(16833937-16833986)
chr1 (292-349)||(26927308-26927364)
chr1 (302-377)||(33300844-33300918)
[»] scaffold0002 (2 HSPs)
scaffold0002 (286-349)||(443526-443588)
scaffold0002 (284-335)||(4526-4577)
[»] chr6 (6 HSPs)
chr6 (297-351)||(5856465-5856519)
chr6 (286-351)||(14042036-14042101)
chr6 (286-350)||(11570328-11570392)
chr6 (286-377)||(11559800-11559890)
chr6 (286-350)||(20747884-20747948)
chr6 (293-341)||(32001770-32001818)
[»] chr2 (9 HSPs)
chr2 (286-377)||(31327175-31327264)
chr2 (285-349)||(14104985-14105049)
chr2 (306-368)||(13291135-13291195)
chr2 (286-349)||(17968544-17968606)
chr2 (286-349)||(25477878-25477940)
chr2 (286-349)||(25496906-25496968)
chr2 (284-335)||(29678220-29678271)
chr2 (284-335)||(30651380-30651431)
chr2 (286-335)||(7737445-7737494)
[»] scaffold0352 (1 HSPs)
scaffold0352 (286-349)||(7557-7619)
[»] scaffold0182 (1 HSPs)
scaffold0182 (299-338)||(9499-9538)


Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 5836828 - 5836425
Alignment:
Q  19 gattttagctttaaattatcttagaaatataaatcaccaccctct--tttatcgtgtccttgcgtgtataatttgcaccatatagcaaggatgattttaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5836828 gattttagctttaaattatcttagaaatataaatcaccaccctctcttttatcgtgtccttgcgtgtataatttgcaccatatagcaaggatgattttaa 5836729  T
Q  117 attgtggttgtgatcacaaataagatcctaaagtgttttatcgagttgttgagaattctttctttcttctacactccgcttgtgttaacgagtaattcag 216  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  5836728 attgtggttgtgatcacaaataagattctaaagtgttttaccgagttgttgagaattctttctttcttctacacttcgcttgtgttaacgagcaattcag 5836629  T
Q  217 atgtttatcnnnnnnnctttcgtactttagaattaagagtgatcttaaaattatagtccattttatgtaaatgttcctttgaaattaagaatggtcttaa 316  Q
    ||||| |||       ||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||    
T  5836628 atgttcatctttttttctttcgtcctttagaatgaagagtgatcttaaaattatagttcattttatataaatgttcctttgaaattaagaatagtcttaa 5836529  T
Q  317 gatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatcatatattgattttggaattaagaatgatcttaataatatata 416  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  5836528 gatcatatttccttcgataatttatgtcccttcgacgaataaaaagtattttaatatc--atattgattttggaattaagaatgatcttaataatatata 5836431  T
Q  417 tatttt 422  Q
    | ||||    
T  5836430 tctttt 5836425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 375
Target Start/End: Complemental strand, 5884511 - 5884382
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgtaaa-tgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||| | |  ||| || |||||||||||| ||| |||| |||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  5884511 gaattaagagtgttctttagacaataatctattttatgtaaaatgtcccttcgaagctaagaatggtcttaagagcatattctcttcgataatttatgtc 5884412  T
Q  345 ccttcgaggaataaaaagta-ttttaatatca 375  Q
    |||||||  |||||| |||| |||||||||||    
T  5884411 ccttcga--aataaagagtacttttaatatca 5884382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 31449429 - 31449522
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| |  ||||||||||||  ||  ||||| |||| | |||||||||||||||||||| |||| ||||||||||||||    
T  31449429 gaattaagagtgttcttaagaccatagtccattttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataatt 31449522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 17953570 - 17953648
Alignment:
Q  298 aaattaagaatggtcttaagatcatattcccttcgata-atttatgtcccttcgaggaataaaaagtattttaatatcata 377  Q
    ||||||||||||||||||||| |||| |||||||||||  ||||||||||||  | ||||||| | |||||||| ||||||    
T  17953570 aaattaagaatggtcttaagagcatagtcccttcgatatttttatgtccctt--aagaataaataatattttaacatcata 17953648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 44925463 - 44925566
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||||||||  ||  ||||| |||| | |||||||||||||||||| | ||||  |||||||||||| ||||||    
T  44925463 gaattaagagtgttcttaagaccatagtccattttcggttcaatgtcccttcggaattaagaatggtcttaaaa-catagccccttcgataatatatgtc 44925561  T
Q  345 ccttc 349  Q
    |||||    
T  44925562 ccttc 44925566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 5884599 - 5884548
Alignment:
Q  160 agttgttgagaattctttctttcttctacactccgcttgtgttaacgagtaa 211  Q
    |||||| ||||||| ||||| ||||||||| || ||||||||||||||||||    
T  5884599 agttgtcgagaattgtttctctcttctacattctgcttgtgttaacgagtaa 5884548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 17020863 - 17020812
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 337  Q
    ||||| |||||| |||||||||||||||||| | |||| |||||||||||||    
T  17020863 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataat 17020812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 17026441 - 17026390
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  17026441 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 17026390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 17551300 - 17551249
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 337  Q
    ||||| |||||| |||||||||||||||||| | |||| |||||||||||||    
T  17551300 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataat 17551249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 17556933 - 17556882
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  17556933 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 17556882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 40125477 - 40125528
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  40125477 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 40125528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 1910551 - 1910603
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    |||||||||||||||||| | |||| ||| ||||||||| || ||||||||||    
T  1910551 aattaagaatggtcttaaaaacatagtccattcgataatataagtcccttcga 1910603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 7002161 - 7002084
Alignment:
Q  289 gttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 368  Q
    ||||||| | ||| ||||||| |||||||  |||| |||||| |||||||||||||||||   |||||||||| ||||||    
T  7002161 gttccttcggaatcaagaatgatcttaagggcatagtccctttgataatttatgtccctt--tggaataaaaaatatttt 7002084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 13799457 - 13799505
Alignment:
Q  289 gttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 337  Q
    ||||||| ||||| || ||||||||||||| |||| |||||||||||||    
T  13799457 gttccttcgaaataaaaaatggtcttaagagcatagtcccttcgataat 13799505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 15951093 - 15951197
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||| | | |||| |||||| |||||| ||||||    
T  15951093 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtctttaaaacatagtccctttgataatatatgtc 15951192  T
Q  345 ccttc 349  Q
    |||||    
T  15951193 ccttc 15951197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 18875971 - 18876035
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| |||||||||||||||||||| | |||| || || ||||||| || |||||||||    
T  18875971 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcactccgataatataagtcccttcg 18876035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 33417054 - 33417010
Alignment:
Q  292 cctttgaaattaagaatggtcttaagatcatattcccttcgataa 336  Q
    |||| |||||||||||||||||||| | |||| ||||||||||||    
T  33417054 ccttcgaaattaagaatggtcttaaaaacatagtcccttcgataa 33417010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 3880532 - 3880443
Alignment:
Q  247 aattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||||||| |||||| | |||||||||||||  ||  |||||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  3880532 aattaagagtgttcttaagactatagtccattttcggtttaatgttccttcgaaattatgaatggtcttaagttcatagtcccttcgata 3880443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 8268807 - 8268717
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| ||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  8268807 aatgtcccttcggaattaagaatggtcttaaaaacatagtccattcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 16372910 - 16372845
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata-atttatgtcccttcg 350  Q
    ||||| |||| | |||||||||||||||||||| |||| |||||||||||  ||||||||||||||    
T  16372910 aatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcccttcg 16372845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 4579998 - 4579921
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataa-tttatgtcccttcgaggaataaaaagtattttaatatcata 377  Q
    ||||||||||||| |||||| |||| |||||||||||| |||| ||||||||||  |||||| | |||||||| ||||||    
T  4579998 aattaagaatggttttaagagcatagtcccttcgataattttaagtcccttcga--aataaataatattttaagatcata 4579921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 336
Target Start/End: Complemental strand, 4930734 - 4930684
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataa 336  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||    
T  4930734 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttcgataa 4930684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 25831990 - 25832055
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    |||||||||||| |||||||||||||||||| | |||| || ||||  ||| || |||||||||||    
T  25831990 aatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaattttgtcccttcga 25832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 48431940 - 48432004
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| |||||||||||||||||||||| |||| |||||||||||| || ||||||||||    
T  48431940 aatgtcccttcgaaattaagaatggtcttaagaacatagtcccttcgataaattttgtcccttcg 48432004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 368
Target Start/End: Original strand, 20168819 - 20168899
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 368  Q
    |||||| ||||| |||||||||||||||||||| |||| |  |||  |||||||||||||||||||  |||||||||||||||    
T  20168819 aatgtttctttggaattaagaatggtcttaagaacatagtttctttaataatttatgtcccttcga--aataaaaagtatttt 20168899  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 757948 - 758011
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  757948 aatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtcccttc 758011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 349
Target Start/End: Complemental strand, 29350793 - 29350691
Alignment:
Q  247 aattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcc 345  Q
    ||||||||||| |||||| || ||||||| ||||  ||  ||||| |||||| |||||| ||||||||||| | |||| ||||||||||||| |||||||    
T  29350793 aattaagagtgttcttaagatcatagtcccttttcggtttaatgtccctttggaattaataatggtcttaaaa-catagtcccttcgataatatatgtcc 29350695  T
Q  346 cttc 349  Q
    ||||    
T  29350694 cttc 29350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 8888461 - 8888367
Alignment:
Q  245 agaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    ||||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||||| |||| ||||||||||||||    
T  8888461 agaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataatt 8888367  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 1640522 - 1640567
Alignment:
Q  285 aaatgttcctttgaaattaagaatggtcttaagatcatattccctt 330  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||    
T  1640522 aaatgttcattcgaaattaagaatggtcttaagatcatagtccctt 1640567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 17025691 - 17025765
Alignment:
Q  292 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 368  Q
    |||| ||||||||||| | |||||||| |||| | ||||||||||| |||||||||||   ||||||||||||||||    
T  17025691 ccttcgaaattaagaaagttcttaagaacatagttccttcgataatatatgtcccttc--agaataaaaagtatttt 17025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 18467775 - 18467676
Alignment:
Q  250 taagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    |||||||| |||||| || ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  18467775 taagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtccctt 18467677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 336
Target Start/End: Complemental strand, 4662623 - 4662572
Alignment:
Q  285 aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataa 336  Q
    |||||| |||| | |||||||||||||||||||| |||| ||||||||||||    
T  4662623 aaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgataa 4662572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 46964523 - 46964460
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||||  |||||||||||||||||| | |||| || |||||||||| |||||||||||    
T  46964523 aatgtccctttagaattaagaatggtcttaaaaacatagtctcttcgataatatatgtcccttc 46964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 12965470 - 12965516
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcg 332  Q
    ||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  12965470 aatgtcccttcgaaattaagaatggtcttaagttcatagtcccttcg 12965516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 25726357 - 25726419
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    ||||| |||| ||| |||||||  ||||||||| |||| ||||||||||||| ||||||||||    
T  25726357 aatgtcccttcgaagttaagaaatgtcttaagaacatagtcccttcgataatatatgtccctt 25726419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 55326276 - 55326227
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  55326276 aattaagaatggtcttaaaa-cataatcccttcgataatatatgtcccttc 55326227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 3034173 - 3034080
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  3034173 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 3034080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 3693148 - 3693055
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  3693148 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 3693055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 8070208 - 8070115
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  8070208 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 8070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 18011823 - 18011766
Alignment:
Q  292 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    |||| ||||| || ||||||||||| | |||| |||||||||||||||||||| ||||    
T  18011823 ccttcgaaatcaaaaatggtcttaaaaacatagtcccttcgataatttatgtcgcttc 18011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 18472507 - 18472459
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  18472507 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtccctt 18472459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 2207329 - 2207392
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||| ||||| |||||| |||||    
T  2207329 aatgtcccttcgaaattaagaatggtcttaa-agcatagtcccttcaataatatatgtctcttcg 2207392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 346
Target Start/End: Original strand, 35456544 - 35456604
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccc 346  Q
    ||||| |||| | |||||||||||||||||||| |||| || ||| |||| ||||||||||    
T  35456544 aatgtcccttcggaattaagaatggtcttaagagcataatctctttgatagtttatgtccc 35456604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 19610402 - 19610347
Alignment:
Q  20 attttagctttaaattatcttagaaatataaatcaccaccctcttttatcgtgtcc 75  Q
    |||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  19610402 attttagctttaaattatcttaaaaatataaaccactaccctcatttatcgtgtcc 19610347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 23688595 - 23688521
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatca 375  Q
    |||||||||||||||||||| |||||||| |||||| || |||||||||||  |||||||| | |||||||| ||||    
T  23688595 aattaagaatggtcttaagagcatattcctttcgatgatatatgtcccttc--ggaataaagactattttaagatca 23688521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 36941829 - 36941922
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| || ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  36941829 gaattaagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 36941922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 377
Target Start/End: Original strand, 9726349 - 9726425
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  9726349 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 9726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 39518912 - 39518861
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  39518912 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 39518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 39523551 - 39523500
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  39523551 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 39523500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 40148397 - 40148322
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcat 376  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||   |||||||||||| |||||| |||||    
T  40148397 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc--agaataaaaagtacttttaagatcat 40148322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 37248397 - 37248447
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||||||||| |||||| | |||| ||||||||||||| |||||||||||    
T  37248397 aattaagaatgatcttaaaaacatagtcccttcgataatatatgtcccttc 37248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 36937075 - 36937168
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    ||||||||||| ||||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  36937075 gaattaagagtaatcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 36937168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 6513497 - 6513561
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| ||||||||||||| |||||| | |||| ||||| ||||||| || |||||||||    
T  6513497 aatgtcccttcgaaattaagaatgatcttaaaaacatagtccctccgataatataagtcccttcg 6513561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 26667828 - 26667725
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| |||||| |||||| ||||||    
T  26667828 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccctttgataatatatgtc 26667730  T
Q  345 ccttc 349  Q
    |||||    
T  26667729 ccttc 26667725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 349
Target Start/End: Complemental strand, 26939425 - 26939322
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| |||||| |||||| ||||||    
T  26939425 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccctttgataatatatgtc 26939327  T
Q  345 ccttc 349  Q
    |||||    
T  26939326 ccttc 26939322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 29167513 - 29167616
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||  ||||||||||||| ||||||    
T  29167513 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaa-cattgtcccttcgataatatatgtc 29167611  T
Q  345 ccttc 349  Q
    |||||    
T  29167612 ccttc 29167616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 377
Target Start/End: Original strand, 19540721 - 19540852
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  19540721 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtc 19540820  T
Q  345 ccttcgaggaataaaaagta-ttttaatatcata 377  Q
    |||||  |||||||| |||| |||||| ||||||    
T  19540821 ccttc--ggaataaagagtacttttaagatcata 19540852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 32081708 - 32081772
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||||| |||||||||||||||||| | |||| ||||||||||||| || |||||||||    
T  32081708 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcg 32081772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 349
Target Start/End: Complemental strand, 3309659 - 3309609
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  3309659 aattaagaatgatcttcagatcatagtcccttcgataatttatgttccttc 3309609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 19107123 - 19107034
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| |||||| ||||  |||||||| |||| |||||| ||||||    
T  19107123 aatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtctcttc--ggaataaagagtacttttaagatcata 19107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 51698474 - 51698373
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  51698474 gaattaagagtgttcttaagacaatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtc 51698375  T
Q  345 cc 346  Q
    ||    
T  51698374 cc 51698373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 1150949 - 1151013
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| | ||||||||||| |||||||| |||| |||||| |||||||||||| ||||||    
T  1150949 aatgtcccttcggaattaagaatgatcttaagagcatagtccctttgataatttatgtaccttcg 1151013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 48276200 - 48276291
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgt--aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    |||||||||||| |||||| | |||||||| ||||  ||  | |||| |||||| ||||||||||||||||||  ||||| |||||||||||    
T  48276200 gaattaagagtgttcttaagactatagtcccttttcggtttagatgtccctttggaattaagaatggtcttaaattcatagtcccttcgata 48276291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 5927799 - 5927861
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  5927799 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 5927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 42316212 - 42316275
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| ||||||||||||||||||||||  ||| ||| ||| || ||||||||||||||    
T  42316212 aatgtcccttcgaaattaagaatggtcttaagagtatagtccgttcaattatttatgtcccttc 42316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 8694227 - 8694166
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    ||||| |||||| |||||||||||||||||| | |||| ||| ||||||||| ||||||||||    
T  8694227 aatgtccctttggaattaagaatggtcttaa-aacatagtccattcgataatatatgtccctt 8694166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 16421553 - 16421491
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| || |||||||    
T  16421553 aatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatataagtccctt 16421491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 13065384 - 13065449
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    ||||| |||| | ||||||||| |||||||| | ||||  |||||||||||| |||||||||||||    
T  13065384 aatgtcccttcggaattaagaaaggtcttaaaaacatagccccttcgataatgtatgtcccttcga 13065449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 31766385 - 31766296
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||| ||||||| |||||||||||   |||||||||||| |||||| ||||||    
T  31766385 aatgtcccttcggaattaagaatggtcttaa-aacatagtccctgcgataatatatgtcccttc--agaataaaaagtacttttaagatcata 31766296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 33468587 - 33468636
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||| |||||  ||||||||||||||||||| ||||| |||||||||||    
T  33468587 aatgtccctttagaattaagaatggtcttaagttcataatcccttcgata 33468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 15805222 - 15805311
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatcata 377  Q
    ||||| |||| | ||||||||||  |||||| | |||| |||||| ||||||||||| ||||||  |||||||| | |||||||||| ||||    
T  15805222 aatgtcccttcggaattaagaataatcttaatagcatagtccctttgataatttatgccccttc--ggaataaataatattttaataccata 15805311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 25968 - 25904
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| || |||||||||    
T  25968 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcg 25904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 349
Target Start/End: Original strand, 16649176 - 16649279
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 344  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  16649176 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtc 16649274  T
Q  345 ccttc 349  Q
    |||||    
T  16649275 ccttc 16649279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 39200298 - 39200409
Alignment:
Q  241 ctttagaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataattt 339  Q
    |||| |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |    
T  39200298 ctttggaattaagagtgttcttaataccatagtccctttttggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatat 39200397  T
Q  340 atgtcccttcga 351  Q
    | ||||||||||    
T  39200398 aagtcccttcga 39200409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 27311369 - 27311431
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 348  Q
    |||||||||| ||| |||||||||||||| |||  ||| ||| ||||||||||||||||||||    
T  27311369 aatgttccttcgaagttaagaatggtcttcagagtatagtcctttcgataatttatgtccctt 27311431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 2493459 - 2493524
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    ||||| |||| | |||||||||||||||||||| |||| |||||||| ||| || |||||||||||    
T  2493459 aatgtcccttcggaattaagaatggtcttaagagcatagtcccttcggtaaattttgtcccttcga 2493524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 3094619 - 3094526
Alignment:
Q  246 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| |||||||||||||||||||| | |||| ||||||||||||||    
T  3094619 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaacagcatagtcccttcgataatt 3094526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 377
Target Start/End: Original strand, 47450820 - 47450898
Alignment:
Q  298 aaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||||||||||||||||| | |||| || |||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  47450820 aaattaagaatggtcttaaaaacatagtctcttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 47450898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 19798583 - 19798647
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| |||||||||||||||||| | | |||| ||||||||||||| || |||||||||    
T  19798583 aatgtcccttcgaaattaagaatggtcttcaaaacataatcccttcgataatataagtcccttcg 19798647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 28434222 - 28434281
Alignment:
Q  292 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    |||| |||||||||||||||||||| | |||| ||| ||||||||| |||||| ||||||    
T  28434222 ccttcgaaattaagaatggtcttaaaagcatagtccattcgataatatatgtctcttcga 28434281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 9352950 - 9352992
Alignment:
Q  288 tgttcctttgaaattaagaatggtcttaagatcatattccctt 330  Q
    |||||||| |||||||||||||||||||||| |||| ||||||    
T  9352950 tgttccttcgaaattaagaatggtcttaagaacatagtccctt 9352992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 16833986 - 16833937
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  16833986 aatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 16833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 26927308 - 26927364
Alignment:
Q  292 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    |||||| |||||||||||||||||  | |||| ||||||||||||| |||||||||||    
T  26927308 cctttggaattaagaatggtcttacaa-catagtcccttcgataatatatgtcccttc 26927364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 33300844 - 33300918
Alignment:
Q  302 taagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    |||||| |||||||| | |||| ||||||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  33300844 taagaacggtcttaaaaacatagtcccttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 33300918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 443526 - 443588
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    |||||||||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  443526 aatgttccttcggaattaagaatggtcttaa-aacatagtcccttcgataatatatgtcccttc 443588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 4577 - 4526
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  4577 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 4526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 5856519 - 5856465
Alignment:
Q  297 gaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    |||||||||||||||||||| | |||| ||||||||||||| || ||||||||||    
T  5856519 gaaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcga 5856465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 351
Target Start/End: Complemental strand, 14042101 - 14042036
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 351  Q
    ||||| |||| |||||||||||||||||||||| |||| | |||||| ||| || |||||||||||    
T  14042101 aatgtcccttcgaaattaagaatggtcttaagaacatagttccttcggtaaattttgtcccttcga 14042036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 11570328 - 11570392
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| ||||||||| ||||||||||||    
T  11570328 aatgtcccttcggaattaagaatggtcttaaaaacatagtccattcgataatatatgtcccttcg 11570392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 11559800 - 11559890
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| || |||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  11559800 aatgtcccttcggaattaagaatggtcttaaaaacatagtccatttgataatatatgtcccttc--ggaataaagagtacttttaagatcata 11559890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 20747884 - 20747948
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 350  Q
    ||||| |||| | ||||||||||| |||||| | |||| |||||| |||||| ||||||||||||    
T  20747884 aatgtcccttcggaattaagaatgatcttaaaaacatagtccctttgataatatatgtcccttcg 20747948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 32001770 - 32001818
Alignment:
Q  293 ctttgaaattaagaatggtcttaagatcatattcccttcgataatttat 341  Q
    ||||| |||||||||||||| ||||| |||| | |||||||||||||||    
T  32001770 ctttggaattaagaatggtcgtaagaacatagttccttcgataatttat 32001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 31327264 - 31327175
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 377  Q
    ||||| |||| | |||||||||||||||||| | |||| | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||||    
T  31327264 aatgtcccttcggaattaagaatggtcttaaaa-catagttccttcgataatatatgtcccttcga--aataaaaagtacttttaagatcata 31327175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 14105049 - 14104985
Alignment:
Q  285 aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    |||||| |||||| |||||||||||||||||||| |||| |||||||| ||| ||  ||||||||    
T  14105049 aaatgtccctttggaattaagaatggtcttaagaacatagtcccttcggtaaatttcgtcccttc 14104985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 13291135 - 13291195
Alignment:
Q  306 aatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 368  Q
    |||||||||||||  ||| ||||||||||||||||||||||||  | ||||||| ||||||||    
T  13291135 aatggtcttaagagtataatcccttcgataatttatgtccctt--aagaataaatagtatttt 13291195  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 17968544 - 17968606
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  17968544 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 17968606  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 25477878 - 25477940
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  25477878 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 25477940  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 25496906 - 25496968
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  25496906 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 25496968  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 29678271 - 29678220
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    |||||||||||| | ||||||||||||||||||| ||||| | |||||||||    
T  29678271 taaatgttccttcggaattaagaatggtcttaagttcatagttccttcgata 29678220  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 30651431 - 30651380
Alignment:
Q  284 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  30651431 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 30651380  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 7737445 - 7737494
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 335  Q
    ||||| |||||| ||||||||||||||||||| ||||| || ||||||||    
T  7737445 aatgtccctttggaattaagaatggtcttaagttcatagtctcttcgata 7737494  T

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Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 7619 - 7557
Alignment:
Q  286 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 349  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| |||||| ||||    
T  7619 aatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtctcttc 7557  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 9499 - 9538
Alignment:
Q  299 aattaagaatggtcttaagatcatattcccttcgataatt 338  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  9499 aattaagaatggtcttaagagcatagtcccttcgataatt 9538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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