View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_low_34 (Length: 413)
Name: NF5921_low_34
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_34 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 16546562 - 16546961
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16546562 |
atttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgca |
16546661 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16546662 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
16546761 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16546762 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
16546861 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16546862 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
16546960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 17831740 - 17831339
Alignment:
| Q |
1 |
atatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17831740 |
atatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaaaatttatgcaaagagccatgtagaactagtgagctcacaggtcatg |
17831641 |
T |
|
| Q |
101 |
catgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtgga |
200 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17831640 |
tatgggttcaagaaatattataagggaatcccactcgttgttatgagatgtttagaatgaaaaaacatatttttaataaactttgcaatgaattggtgga |
17831541 |
T |
|
| Q |
201 |
acatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
17831540 |
acatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacaatgtcggtaatagaatgattcaagaa |
17831441 |
T |
|
| Q |
301 |
agatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcct |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17831440 |
agatttcaacatt-agggtgagactgtaagtagacatttacatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcct |
17831342 |
T |
|
| Q |
401 |
atg |
403 |
Q |
| |
|
||| |
|
|
| T |
17831341 |
atg |
17831339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 5917922 - 5917523
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5917922 |
atttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgca |
5917823 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
5917822 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
5917723 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5917722 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
5917623 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5917622 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
5917524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 36310703 - 36311102
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36310703 |
atttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgca |
36310802 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
36310803 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
36310902 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36310903 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
36311002 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36311003 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
36311101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 401
Target Start/End: Original strand, 13895144 - 13895518
Alignment:
| Q |
26 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
125 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||||||||||||||| | |||||| | || |||||||||||||||||||| |
|
|
| T |
13895144 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacgggtcattcttgggttcaagaaatattgcaagg |
13895243 |
T |
|
| Q |
126 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacat |
225 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || | | || ||||||||| ||||| | |
|
|
| T |
13895244 |
taatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcactgaattagttaagcttggtttaaagtcatctaatcga |
13895343 |
T |
|
| Q |
226 |
gtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggggtgagact |
325 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
13895344 |
acgacggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gggtgagact |
13895442 |
T |
|
| Q |
326 |
gtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatccta |
401 |
Q |
| |
|
|| |||||| |||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
13895443 |
gttagtagatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
13895518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 26 - 401
Target Start/End: Original strand, 14035771 - 14036145
Alignment:
| Q |
26 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
125 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||||||||||||||| | ||||||| | || |||||||||||||||||||| |
|
|
| T |
14035771 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaagg |
14035870 |
T |
|
| Q |
126 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacat |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || | |||||| | | |||| | |||| || | | || ||||||||| ||||| | |
|
|
| T |
14035871 |
taatccaactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcactaaattagttaagcttggtttaaagtcatctaatcga |
14035970 |
T |
|
| Q |
226 |
gtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggggtgagact |
325 |
Q |
| |
|
|| ||||||||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
14035971 |
atgacggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gggtgagact |
14036069 |
T |
|
| Q |
326 |
gtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatccta |
401 |
Q |
| |
|
||||||||||||||||||| || ||||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
14036070 |
gtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
14036145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 23 - 311
Target Start/End: Complemental strand, 23361919 - 23361631
Alignment:
| Q |
23 |
tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgca |
122 |
Q |
| |
|
|||||||| || | ||||||||||| |||| |||||| |||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||| |
|
|
| T |
23361919 |
tggctgcactaatgggtgagtatgctgtaaaacatttatgtaaagagccatgtagaactagtgagctaacagagcatgcatgagtgaaagaagtattgca |
23361820 |
T |
|
| Q |
123 |
agggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaa |
222 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||||||| | |||| || || |||| ||||||| | |||| |
|
|
| T |
23361819 |
aggaaatcccactcgttgttatgagatgtttcaaatggaaaaacatatttttcataaactttgcactaaattagttgatcatggtttaaagcccactaat |
23361720 |
T |
|
| Q |
223 |
catgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
|| | || || ||||| |||||||||||||| || | ||||| || || || || | ||||||||||||||||||||| || ||||| |
|
|
| T |
23361719 |
cacataggagtagaagagatggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaaca |
23361631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Complemental strand, 35570884 - 35570485
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35570884 |
atttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgca |
35570785 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
35570784 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
35570685 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
35570684 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
35570585 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35570584 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
35570486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 4345163 - 4345417
Alignment:
| Q |
57 |
tttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
4345163 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcga |
4345262 |
T |
|
| Q |
157 |
atggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttt |
256 |
Q |
| |
|
||||||||| |||||||| |||||||||||| | |||| || || |||| ||||||| | |||| ||| | ||||| ||||| |||||||||||||| | |
|
|
| T |
4345263 |
atggaaaaacatatttttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcatataggggtagaagagatggttgcaatgttct |
4345362 |
T |
|
| Q |
257 |
tggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
| | ||||| || || || || | ||||||||||||||||||||| || ||||| |
|
|
| T |
4345363 |
tacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaaca |
4345417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 231 - 401
Target Start/End: Original strand, 46406837 - 46407006
Alignment:
| Q |
231 |
ggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggggtgagactgtaag |
330 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||||||||||| |||||||| || | |||||||||| || |
|
|
| T |
46406837 |
ggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gagtgagactgttag |
46406935 |
T |
|
| Q |
331 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatccta |
401 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
46406936 |
tagatgttttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
46407006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 22480621 - 22481020
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22480621 |
atttgaagaatcctatattttggctacactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgca |
22480720 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
22480721 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
22480820 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22480821 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
22480920 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22480921 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
22481019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 26 - 403
Target Start/End: Original strand, 16840980 - 16841356
Alignment:
| Q |
26 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
125 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||| ||||| | ||||||||| ||| |||||||||||||||| |
|
|
| T |
16840980 |
ctgcactacttggtgagcatgcaacaaataatttatgtaaagagccatgtagaactagtgtgctcacaagtcatgcatttgtttaagaaatattgcaagg |
16841079 |
T |
|
| Q |
126 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacat |
225 |
Q |
| |
|
||||| |||| | | |||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16841080 |
gaatctcacttgctattatgagatgtttcgaattgaaaaatatatttttcataaactttacaatgaatacgtggaacatgatttaaagtcttctaaacat |
16841179 |
T |
|
| Q |
226 |
gtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggggtgagact |
325 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||| || ||||| | |||||||||||||||| ||||||||||||| | | |||||||| |
|
|
| T |
16841180 |
ataggggttgaagaaatggttgcaatgttttttatcgttgtaggtcatggtgtaggtaatagaatgattcaataaagatttcaacact-tgagtgagact |
16841278 |
T |
|
| Q |
326 |
gtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||| |||||| ||||||| |||||||||||||||||||| |||||| |||| |
|
|
| T |
16841279 |
gtaagtagtcatttccatagtgtatttcttgcatgtcttaagttatccttcaaatatattaaacctaaagatcatatg |
16841356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 401
Target Start/End: Original strand, 33231601 - 33231975
Alignment:
| Q |
26 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
125 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||||||||||||||| | ||||||| | || |||||||||||||||||||| |
|
|
| T |
33231601 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaagg |
33231700 |
T |
|
| Q |
126 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacat |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || | |||||| | | |||| | |||| || | | || ||||||||| ||||| | |
|
|
| T |
33231701 |
taatccgactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcactaaattagttaagcttggtttaaagtcatctaatcga |
33231800 |
T |
|
| Q |
226 |
gtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggggtgagact |
325 |
Q |
| |
|
| ||||||||||||||||||||||||||| || ||||| |||||||| || | ||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
33231801 |
acgacggttgaagaaatggttgcaatgtttttagttgttgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gggtgagact |
33231899 |
T |
|
| Q |
326 |
gtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatccta |
401 |
Q |
| |
|
|| |||||| |||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
33231900 |
gttagtagatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaatatattaaacccgaagatccta |
33231975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 22809174 - 22809427
Alignment:
| Q |
57 |
tttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| |||||||| || ||||| ||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
22809174 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgtaaggaaatcccactcgttgttatgagatgtttcga |
22809273 |
T |
|
| Q |
157 |
atggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttt |
256 |
Q |
| |
|
||||||||| |||||||| |||||||||||| | |||| || || |||| ||||||| | |||| || | || || ||||| |||||||||||||| | |
|
|
| T |
22809274 |
atggaaaaaaatatttttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcacataggagtagaagagatggttgcaatgttct |
22809373 |
T |
|
| Q |
257 |
tggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
| | ||||| || || || || | ||||||||||||||||||||| || ||||| |
|
|
| T |
22809374 |
tacttgttgttggaca-ggagtgggtaatagaatgattcaagaaaggttccaaca |
22809427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 9714 - 9312
Alignment:
| Q |
1 |
atatttcaagaatcctattttttgg-ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcat |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
9714 |
atatttcaagaatcctattttttggtctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcacaggtcat |
9615 |
T |
|
| Q |
100 |
gcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtgg |
199 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9614 |
gcatgggtttaagaaatattgcaagggaatcccactcgttgttatgagatgttttgaatggaaaaacatatttttaataaactttgcaatgaattggtgg |
9515 |
T |
|
| Q |
200 |
aacatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaaga |
299 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
9514 |
aacatgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacagtgtcggtaatagaatgattcaaga |
9415 |
T |
|
| Q |
300 |
aagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcc |
399 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
9414 |
aagatttcaacatt-tgggtgagactgtaagtagacatttccatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccaaagatcc |
9316 |
T |
|
| Q |
400 |
tatg |
403 |
Q |
| |
|
|||| |
|
|
| T |
9315 |
tatg |
9312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 16564649 - 16565048
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
16564649 |
atttgaagaatcctatattttcgctgcactacttggtgagtatgcaacaaaatatttatgcaaagcgccatgtagaactagtgagctcacatgtcatgca |
16564748 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
16564749 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaac |
16564848 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16564849 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
16564948 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16564949 |
atttcaacattc-gggtgagactgtaagtagacatttttatcgtgtacttcatgcatgccttaagttgtccttcaaatatattaaacccgaagatcctat |
16565047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 15617957 - 15618353
Alignment:
| Q |
1 |
atatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatg |
100 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
15617957 |
atatttgaagaatcatattttttgactgcactacatggtgagtatgcaacaaaaattttatgcaaagagccatgtagaaccagtgagctcacatgtcatg |
15618056 |
T |
|
| Q |
101 |
catgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtgga |
200 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
15618057 |
catgtgttcaagaaatattgcaagggatttccactcattattatgagatgtttcgaatggaaaaacatatttttcataaactttgcaatgaattgctgga |
15618156 |
T |
|
| Q |
201 |
acatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
15618157 |
acatgatttaaagtcttctaaacatat----gttgaagaaatggttgcaatgtttttggtcgttgtaggccatggtgtcgatagtagaatgattcaagaa |
15618252 |
T |
|
| Q |
301 |
agatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcct |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
15618253 |
agatttcaacattc-gggtgagactgtaagtacacatttccatcgtgtacttcatgcatgccttgagttatccttcaaatatattaaacccgaagatcct |
15618351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 24037162 - 24036778
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| ||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
24037162 |
ttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagtgagctaacgggtcattcctgggttcaagaaata |
24037063 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || | | || ||||||||| | |
|
|
| T |
24037062 |
ttgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcactgaattagttaagcttggtttaaagtcat |
24036963 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| | || ||||||||||||||||||||||||||| || | ||| |||||||| || | ||||||||||||||||||||| |||||||| || || |
|
|
| T |
24036962 |
ctaatcgaatgacggttgaagaaatggttgcaatgtttttagttgctgttggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gg |
24036864 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
24036863 |
gtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
24036778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 22697907 - 22698161
Alignment:
| Q |
57 |
tttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
22697907 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcga |
22698006 |
T |
|
| Q |
157 |
atggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttt |
256 |
Q |
| |
|
||||||||| |||||||| |||||||||||| | |||| || || |||| ||||||| | |||| || | ||||| ||||| |||||||||||||| | |
|
|
| T |
22698007 |
atggaaaaacatatttttcataaactttgcactaaattagttgatcatggtttaaagcccactaatcacataggggtagaagagatggttgcaatgttct |
22698106 |
T |
|
| Q |
257 |
tggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
| | ||||| || || || || | ||||||||||||||||||||| || ||||| |
|
|
| T |
22698107 |
tacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaaca |
22698161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 403
Target Start/End: Original strand, 37637814 - 37638212
Alignment:
| Q |
3 |
atttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgca |
102 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37637814 |
atttgaagaatcctatattttgactgcactacttggtgagtatgcaacaaaaattt-atgtaaagagccatgtagaactagtgagctcacaggtcatgca |
37637912 |
T |
|
| Q |
103 |
tgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaac |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
37637913 |
tgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcataaactttgccatgaattggtggaat |
37638012 |
T |
|
| Q |
203 |
atgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaag |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
37638013 |
atgatttaaagtcttctaaacatatgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcggtaatagaatgattcaagaaag |
37638112 |
T |
|
| Q |
303 |
atttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctat |
402 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
37638113 |
atttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaaattgtccttcaaatatattaaacccgaagatcctat |
37638211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 16247741 - 16247359
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| | || | ||||||||| |||||||||| || |
|
|
| T |
16247741 |
tttttttgctgcactacttggtgagtatgcaaaaaaaaaaa-atgcaaagagccatgtagaactagtgaacccacatgtcatgcatcagttcaagaagta |
16247643 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16247642 |
ttgcaagggaatcccactcgttgttataagatgtttcaaatgaaaaaacatatatttcataaactttgcaatgaattggtggaacatgatttaaagtctt |
16247543 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| || |||||||||||||||| |||||||||||||| ||||||||| |||||| ||| | ||||||||| |||||||||| |||||||||||| || |
|
|
| T |
16247542 |
ttaaatatatgggggttgaagaaattgttgcaatgtttttagtcgttgtaagccacgatgtaggtaatagaataattcaagaaatatttcaacattc-gg |
16247444 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
|| ||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
16247443 |
gttagactataagtagacattttcatcg-gtacttcatgcatgccttaagttgtccttcaaatatattaaacctgaagatcctatg |
16247359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 51126331 - 51125947
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| ||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
51126331 |
ttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagtgagctaacgggtcattcctgggttcaagaaata |
51126232 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || || | || ||||||||| | |
|
|
| T |
51126231 |
ttgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcactgaattagttgagcttggtttaaagtcat |
51126132 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| | || ||||||||||| ||||||||||||||| || | ||| ||||||| || | ||||||||||||||||||||| |||||||| || || |
|
|
| T |
51126131 |
ctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gg |
51126033 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
51126032 |
gtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
51125947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 57 - 311
Target Start/End: Original strand, 7010828 - 7011082
Alignment:
| Q |
57 |
tttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
156 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
7010828 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttttgagatgtttcga |
7010927 |
T |
|
| Q |
157 |
atggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaacatgtgggggttgaagaaatggttgcaatgtttt |
256 |
Q |
| |
|
||||||||| |||||||| |||||||||||| | |||| || || |||| ||||||||| |||| || | ||||| ||||| |||||||||||||| | |
|
|
| T |
7010928 |
atggaaaaacatatttttcataaactttgcactaaattagttgatcatggtttaaagtccactaatcacataggggtagaagagatggttgcaatgttct |
7011027 |
T |
|
| Q |
257 |
tggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
| | ||||| || || || || | ||||| ||||||||||||||| || ||||| |
|
|
| T |
7011028 |
tacttgttgttggacatggagtgggtaataaaatgattcaagaaaggttccaaca |
7011082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 192522 - 192906
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| ||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
192522 |
ttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagtgagctaacgggtcattcctgggttcaagaaata |
192621 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || || | || ||||||||| | |
|
|
| T |
192622 |
ttgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcattgaattagttgagcttggtttaaagtcat |
192721 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| | || ||||||||||| ||||||||||||||| || | ||| ||||||| || | ||||||||||||||||||||| |||||||| || || |
|
|
| T |
192722 |
ctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gg |
192820 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
192821 |
gtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
192906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 720126 - 720510
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| ||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
720126 |
ttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagtgagctaacgggtcattcctgggttcaagaaata |
720225 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || || | || ||||||||| | |
|
|
| T |
720226 |
ttgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcattgaattagttgagcttggtttaaagtcat |
720325 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| | || ||||||||||| ||||||||||||||| || | ||| ||||||| || | ||||||||||||||||||||| |||||||| || || |
|
|
| T |
720326 |
ctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gg |
720424 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
720425 |
gtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
720510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 881233 - 881617
Alignment:
| Q |
18 |
ttttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaata |
117 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| ||||||||||||| | |||||| | || |||||||||||| |
|
|
| T |
881233 |
ttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagtgagctaacgggtcattcctgggttcaagaaata |
881332 |
T |
|
| Q |
118 |
ttgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtctt |
217 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| || | |||||| | | |||| |||||| || || | || ||||||||| | |
|
|
| T |
881333 |
ttgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaacatgtatttaatctattgtgcattgaattagttgagcttggtttaaagtcat |
881432 |
T |
|
| Q |
218 |
ctaaacatgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaacattcggg |
317 |
Q |
| |
|
|||| | || ||||||||||| ||||||||||||||| || | ||| ||||||| || | ||||||||||||||||||||| |||||||| || || |
|
|
| T |
881433 |
ctaatcgaatgacggttgaagaaacggttgcaatgtttttagttgctgttagccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gg |
881531 |
T |
|
| Q |
318 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtccttcaaatatattaaacccgaagatcctatg |
403 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||| |||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
881532 |
gtgagactgtaagtagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaatatattaaacccgaagatcctatg |
881617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 19647333 - 19647621
Alignment:
| Q |
23 |
tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtgagctcaaaggtcatgcatgagttcaagaaatattgca |
122 |
Q |
| |
|
|||||||| || | ||||||||||| || ||| |||||| |||||||||||||||||||||||||| | ||| |||||||| || ||||| ||||||| |
|
|
| T |
19647333 |
tggctgcactaatgggtgagtatgctacgaaacatttatgtaaagagccatgtagaactagtgagctaatagggcatgcatgggtgaaagaagtattgca |
19647432 |
T |
|
| Q |
123 |
agggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaactttgcaatgaattggtggaacatgatttaaagtcttctaaa |
222 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||| || || |||| |||||| | |||| |
|
|
| T |
19647433 |
aggaaatcccactcgttgttataagatgtttcgaatggaaaaatatatttttcataaactttgcactaaattagttgatcatggtttaaatcccactaat |
19647532 |
T |
|
| Q |
223 |
catgtgggggttgaagaaatggttgcaatgtttttggtcgttgtaggccacggtgtcgataatagaatgattcaagaaagatttcaaca |
311 |
Q |
| |
|
|| | ||||| ||||| |||||||||||||| || | ||||| || || || || | ||||||||||||||||||||| || ||||| |
|
|
| T |
19647533 |
cacataggggtagaagagatggttgcaatgttcttacttgttgttggacatggagtgggtaatagaatgattcaagaaaggttccaaca |
19647621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University