View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_35 (Length: 412)

Name: NF5921_low_35
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_35
NF5921_low_35
[»] chr2 (10 HSPs)
chr2 (22-395)||(11281286-11281642)
chr2 (71-206)||(1417364-1417499)
chr2 (31-274)||(30256108-30256351)
chr2 (223-309)||(13478769-13478855)
chr2 (236-274)||(29488713-29488751)
chr2 (168-204)||(12676507-12676543)
chr2 (242-276)||(6686790-6686824)
chr2 (228-276)||(6923849-6923897)
chr2 (125-201)||(13242544-13242620)
chr2 (228-276)||(28779825-28779873)
[»] chr7 (10 HSPs)
chr7 (71-232)||(32188069-32188230)
chr7 (108-202)||(39608443-39608537)
chr7 (137-202)||(3116923-3116988)
chr7 (128-201)||(5362373-5362446)
chr7 (125-201)||(32996366-32996441)
chr7 (257-313)||(37502184-37502240)
chr7 (137-199)||(34703759-34703821)
chr7 (248-322)||(43510227-43510301)
chr7 (124-201)||(25993917-25993994)
chr7 (125-202)||(26905120-26905197)
[»] chr4 (13 HSPs)
chr4 (45-312)||(12922184-12922452)
chr4 (125-201)||(17381451-17381527)
chr4 (163-274)||(13834383-13834494)
chr4 (129-202)||(48973308-48973381)
chr4 (117-201)||(9297480-9297564)
chr4 (119-311)||(52700886-52701078)
chr4 (229-276)||(37687241-37687288)
chr4 (163-201)||(36409659-36409697)
chr4 (163-201)||(36423825-36423863)
chr4 (249-311)||(41679195-41679256)
chr4 (125-202)||(40836759-40836836)
chr4 (125-198)||(50384515-50384588)
chr4 (242-274)||(32934158-32934190)
[»] chr6 (9 HSPs)
chr6 (150-322)||(9436666-9436838)
chr6 (163-274)||(25085024-25085135)
chr6 (228-274)||(9762617-9762663)
chr6 (168-274)||(21021037-21021143)
chr6 (121-201)||(515855-515935)
chr6 (223-274)||(921447-921498)
chr6 (219-276)||(998622-998679)
chr6 (209-265)||(21926602-21926658)
chr6 (125-201)||(24285104-24285180)
[»] chr1 (13 HSPs)
chr1 (125-201)||(6541133-6541209)
chr1 (74-177)||(38445022-38445125)
chr1 (121-199)||(12626923-12627001)
chr1 (120-201)||(7151942-7152023)
chr1 (94-198)||(26515202-26515306)
chr1 (123-183)||(30519185-30519244)
chr1 (241-291)||(12436960-12437010)
chr1 (244-322)||(30050308-30050386)
chr1 (242-276)||(46187355-46187389)
chr1 (209-270)||(14926344-14926405)
chr1 (241-322)||(16192261-16192342)
chr1 (180-269)||(39162467-39162555)
chr1 (125-202)||(51273342-51273419)
[»] chr3 (10 HSPs)
chr3 (115-274)||(45681178-45681337)
chr3 (31-202)||(3941673-3941844)
chr3 (33-81)||(46008600-46008648)
chr3 (245-304)||(31186677-31186736)
chr3 (257-323)||(1324497-1324563)
chr3 (119-201)||(53705847-53705929)
chr3 (188-276)||(11508076-11508164)
chr3 (242-322)||(34105286-34105366)
chr3 (164-236)||(37326767-37326839)
chr3 (125-201)||(40954453-40954529)
[»] chr5 (10 HSPs)
chr5 (125-202)||(27001244-27001321)
chr5 (229-305)||(19342521-19342597)
chr5 (52-158)||(42525279-42525385)
chr5 (126-202)||(3709318-3709394)
chr5 (125-202)||(8206194-8206271)
chr5 (228-305)||(28297490-28297567)
chr5 (163-274)||(463185-463295)
chr5 (79-202)||(33204403-33204526)
chr5 (163-201)||(8814187-8814225)
chr5 (32-106)||(32518004-32518078)
[»] chr8 (11 HSPs)
chr8 (127-274)||(18080350-18080497)
chr8 (163-269)||(17488132-17488238)
chr8 (182-276)||(31824258-31824352)
chr8 (209-274)||(6915500-6915565)
chr8 (257-322)||(33590100-33590165)
chr8 (229-276)||(36469472-36469519)
chr8 (163-266)||(42659867-42659970)
chr8 (125-274)||(7603949-7604098)
chr8 (257-322)||(28802291-28802356)
chr8 (125-202)||(33508583-33508660)
chr8 (140-204)||(23356449-23356513)
[»] scaffold0053 (1 HSPs)
scaffold0053 (125-178)||(15444-15497)
[»] scaffold0086 (1 HSPs)
scaffold0086 (117-201)||(21721-21805)
[»] scaffold0687 (1 HSPs)
scaffold0687 (125-274)||(1633-1782)
[»] scaffold0004 (1 HSPs)
scaffold0004 (117-158)||(226621-226662)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 11281642 - 11281286
Alignment:
Q  22 taaaatttaagtctttaattatacattttgttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatgaatt 121  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11281642 taaaatttaagtctttaatcgtacattttgttagtaaaactagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatggatt 11281543  T
Q  122 gatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaat 221  Q
    ||||||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  11281542 gatatgacaataattaagtatttata--------tatgatcataagtaagtatattgtgggactaatatgataatattaataagaatttttaacttcaat 11281451  T
Q  222 gactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaa 321  Q
    |||||         ||| |||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||| ||||    
T  11281450 gacta---------atacgatgcacaatcagaaactattttaaaattttgatataatgaaatattattgtgattatttgttacacattcaggtaccaaaa 11281360  T
Q  322 tagatattactcttttaattttacataacatggactaaaatatctctattagaggagtcttcacttcacaagac 395  Q
    |||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11281359 tagcaattactctttgaattttacataacatggactaagatatctctattagaggagtcttcacttcacaagac 11281286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 71 - 206
Target Start/End: Complemental strand, 1417499 - 1417364
Alignment:
Q  71 acattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaa 170  Q
    ||||||||||||||| |||||| | ||||||||| |||| || ||   | |||||||| | ||||||| |||||||||||| ||||||||  |||| |||    
T  1417499 acattgaaatagttcctcaacgctaacattaactctatttatacagagactgatatgatagtaattaaatatttataaagactaatataacgataaataa 1417400  T
Q  171 gtatattgtgggactaatatgacaatattaataaga 206  Q
    |||||||| | ||  |||||||||||||||| ||||    
T  1417399 gtatattgagagataaatatgacaatattaacaaga 1417364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 274
Target Start/End: Original strand, 30256108 - 30256351
Alignment:
Q  31 agtctttaattatacattttgttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgaca 130  Q
    ||||||||||| | |||||| ||||| |||||||||   ||| || |||||||||||||    ||||||||||| |||||||  | | |||||||| |||    
T  30256108 agtctttaattgtgcattttattagttaaaatagtccccaacgttaaaatagttcttcattattgacattaactctattcatatagggattgatataaca 30256207  T
Q  131 ataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactacttt 230  Q
    |||| ||||||  || || |  | |||| || |||| ||||||||||| | |||||||||||||||||||| || |  ||||||| |||   |||| | |    
T  30256208 ataactaagtacatacaaggtctgatatgataataaataagtatattgagtgactaatatgacaatattaacaaaatattttaacgtaagaaactattct 30256307  T
Q  231 gactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    |||||| || ||||||||||||| | |   ||||||||||||||    
T  30256308 gactaacataatgcacaatcaaatatttaattaaaattttgata 30256351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 13478769 - 13478855
Alignment:
Q  223 actactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatatt 309  Q
    |||| |||||||||||  ||||||||||||||| ||||||||||||||||||||   |||||||||||| | ||||  |||||||||    
T  13478769 actattttgactaataaaatgcacaatcaaaaactattttaaaattttgatatattcaaagattattgttactattcattacatatt 13478855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 29488751 - 29488713
Alignment:
Q  236 atatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  29488751 atatgatgcacaatcaaaaactattttaaaattttgata 29488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 12676543 - 12676507
Alignment:
Q  168 taagtatattgtgggactaatatgacaatattaataa 204  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12676543 taagtatattgagggactaatatgacaatattaataa 12676507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 6686824 - 6686790
Alignment:
Q  242 tgcacaatcaaaaagtattttaaaattttgatata 276  Q
    |||||||||||||| ||||||||||||||||||||    
T  6686824 tgcacaatcaaaaactattttaaaattttgatata 6686790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 6923849 - 6923897
Alignment:
Q  228 tttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    ||||||||||||  || |||||||| || ||||||||||||||||||||    
T  6923849 tttgactaatatagtgtacaatcaataactattttaaaattttgatata 6923897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 13242620 - 13242544
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||| |||||| |||||| |||| |||| |  ||||||||  |||||   |||||||||||||||||||||    
T  13242620 atgacaataaataagtacttataaggattgatatgacaataagtaaccatattaaaggactaatatgacaatattaa 13242544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 28779825 - 28779873
Alignment:
Q  228 tttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    ||||||||||||  || |||||||| || ||||||||||||||||||||    
T  28779825 tttgactaatatagtgtacaatcaataactattttaaaattttgatata 28779873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 71 - 232
Target Start/End: Original strand, 32188069 - 32188230
Alignment:
Q  71 acattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaa 170  Q
    |||||||||| || | |||||| ||||||| | | ||||||| |||| | | |||||||| ||||||||||||||||| || |||||| || ||||||||    
T  32188069 acattgaaattgtccatcaacgctgacattcattttattcatacatggacttatatgacactaattaagtatttataatgactaatatgataataagtaa 32188168  T
Q  171 gtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttga 232  Q
    |||||||| |||||||||||| |||||||||| |||  ||||||| |||  ||||| |||||    
T  32188169 gtatattgggggactaatatgtcaatattaattagacattttaacgtaagagactattttga 32188230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 39608537 - 39608443
Alignment:
Q  108 ttcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    ||||| |||| | ||| |||||||||| |||||| ||||||||| |||||  || ||||||||||||| ||   |||||||||||||||||||||    
T  39608537 ttcatacatggactgaaatgacaataaataagtaattataaagactaatacgataataagtaagtatactgaatgactaatatgacaatattaat 39608443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 3116988 - 3116923
Alignment:
Q  137 aagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    ||||| ||||||||| | ||||||| ||||||||||||||||   |||||||||||||||||||||    
T  3116988 aagtacttataaagactgatataataataagtaagtatattgaaagactaatatgacaatattaat 3116923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 5362446 - 5362373
Alignment:
Q  128 acaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||| ||| ||||||||| |||| |||| || |||| |||||||||||  ||||||||||||| |||||||    
T  5362446 acaataagtaaatatttataaggattgatatgataataaataagtatattgaaggactaatatgaccatattaa 5362373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 32996441 - 32996366
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||| || ||| |||||| || |||||| || |||| |||||||||||  |||||||||||||||||||||    
T  32996441 atgacaataaata-gtacttataaggactaatatgataataaataagtatattgaaggactaatatgacaatattaa 32996366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 37502240 - 37502184
Alignment:
Q  257 tattttaaaattttgatataacgaaagattattgtgattatttgttacatattcaga 313  Q
    ||||||||||||||||||||   ||||||||||||| ||||| |||||| |||||||    
T  37502240 tattttaaaattttgatatattaaaagattattgtggttattcgttacacattcaga 37502184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 34703821 - 34703759
Alignment:
Q  137 aagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatatt 199  Q
    |||||||||||| |||| ||||||  ||||||||||||| ||   ||||||||||||||||||    
T  34703821 aagtatttataatgattgatataacaataagtaagtatactgaaagactaatatgacaatatt 34703759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 322
Target Start/End: Complemental strand, 43510301 - 43510227
Alignment:
Q  248 atcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    |||||| | |||||||||||||||||||| |||   |||||||||| ||||| ||||||||| ||  ||||||||    
T  43510301 atcaaatactattttaaaattttgatatatcgacgaattattgtgactatttattacatatttagggactaaaat 43510227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 25993994 - 25993917
Alignment:
Q  124 tatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||||||  ||| || |||||| || ||||||||| |||||||||||||||  |  |||||||||||||| ||||    
T  25993994 tatgacaatagataaatacttataaggactaatataataataagtaagtatattacgaaactaatatgacaatgttaa 25993917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 26905120 - 26905197
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||||||| |||||| ||| || || |||||| |  ||||||||||||||||  ||| |||||||| |||||||||    
T  26905120 atgacaataaataagtacttacaaggactaatatgacaataagtaagtatattgaaggaataatatgataatattaat 26905197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 45 - 312
Target Start/End: Complemental strand, 12922452 - 12922184
Alignment:
Q  45 cattttgttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtattt 144  Q
    ||||| ||||||  |||||||||   |||||||||||||   |||| | ||||||||||||||||||   | | | ||||||||||||||||||||||||    
T  12922452 catttcgttagtcgaaatagtcttcgacattgaaatagtcgctcaatgctgacattaactatattcacagaggtactgatatgacaataattaagtattt 12922353  T
Q  145 ataaagattaatataatcataagtaagtatattgtgggactaatatgac-aatattaataagaatttttaacttaaatgactactttgactaatatgatg 243  Q
    ||||    |||||| |  ||||| |||||||||| ||||||| | |||| ||||||||  ||   ||||||| ||||  |||  ||||||||| ||  ||    
T  12922352 ataatatctaatatgacaataagcaagtatattgagggactactctgacaaatattaacgagccattttaacgtaaaaaacttttttgactaacatcgtg 12922253  T
Q  244 cacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcag 312  Q
    |||||||||||| |||||| |||||| |||| |  |||| | |||||||| || || ||||| ||||||    
T  12922252 cacaatcaaaaactattttgaaatttcgatacattgaaatactattgtgactacttattacacattcag 12922184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 17381451 - 17381527
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||| ||||||  ||||| || ||| || || ||||||||||||||||  |||||||||||||||||||||    
T  17381451 atgacaataaataagtacgtataaggactaacatgataataagtaagtatattgaaggactaatatgacaatattaa 17381527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 13834494 - 13834383
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtatttt 262  Q
    ||||||||||||||||  ||||||||||||||||||||| ||    ||||||  | || ||||| ||||||||| |   |||||||||||  | ||||||    
T  13834494 ataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggactatttt 13834395  T
Q  263 aaaattttgata 274  Q
    ||||||||||||    
T  13834394 aaaattttgata 13834383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 48973308 - 48973381
Alignment:
Q  129 caataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||| ||||||||||||| ||   |||| |  ||||||||||||||||  ||||||||||||||||||||||    
T  48973308 caataagtaagtatttataaggaccgatatgacaataagtaagtatattgaaggactaatatgacaatattaat 48973381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 9297564 - 9297480
Alignment:
Q  117 gaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||| ||||||||||  |||||||||||| || | |||| || |||| ||||||||||    ||||||||||||||||||||    
T  9297564 gaattgaaatgacaataaagaagtatttataaggactgatatgataataaataagtatatttaatgactaatatgacaatattaa 9297480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 311
Target Start/End: Original strand, 52700886 - 52701078
Alignment:
Q  119 attgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaactta 218  Q
    |||||||||||||||| ||| || || || ||||| |||| || |||| || ||||||||  |||||  ||||||||||||||||| |  ||||||| |     
T  52700886 attgatatgacaataaataactacttttagagattgatatgataataattatgtatattgaaggactgttatgacaatattaataaaacattttaacatg 52700985  T
Q  219 aatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattca 311  Q
    || ||||| ||||| |||     ||||||| || | | ||||||||||||| |||| |   ||  |||||| ||||||||||||||| |||||    
T  52700986 aaagactattttgattaaagaagtgcacaaacatagactattttaaaatttagatacagttaagaattattatgattatttgttacacattca 52701078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 37687241 - 37687288
Alignment:
Q  229 ttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    |||||||||||  || ||||||||||| ||||||||||||||||||||    
T  37687241 ttgactaatatagtgtacaatcaaaaactattttaaaattttgatata 37687288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 36409659 - 36409697
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  36409659 ataagtaagtatattgaaggactaatatgacaatattaa 36409697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 36423825 - 36423863
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  36423825 ataagtaagtatattgaaggactaatatgacaatattaa 36423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 41679195 - 41679256
Alignment:
Q  249 tcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattca 311  Q
    ||||||| ||||||||||||||||||||  |||| |||||||||| || | ||||||||||||    
T  41679195 tcaaaaattattttaaaattttgatatattgaaa-attattgtgactactagttacatattca 41679256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 40836836 - 40836759
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||||||| ||||||||||||| || | |||| || |||||||||| |||||   ||||  |||||||||||||||    
T  40836836 atgacaataagtaagtatttataaggactgatatgataataagtaagtgtattgaaagactggtatgacaatattaat 40836759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 50384515 - 50384588
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatat 198  Q
    |||||||||| ||| || |||||| |||| |||| || ||||||||||||||||   ||| |||||||||||||    
T  50384515 atgacaataaataaatacttataaggattgatatgataataagtaagtatattgaaagacgaatatgacaatat 50384588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 32934158 - 32934190
Alignment:
Q  242 tgcacaatcaaaaagtattttaaaattttgata 274  Q
    |||||||||||||| ||||||||||||||||||    
T  32934158 tgcacaatcaaaaactattttaaaattttgata 32934190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 322
Target Start/End: Original strand, 9436666 - 9436838
Alignment:
Q  150 gattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaat 249  Q
    |||| |||| || |||| ||||||||||| |||||||||||||||||||||| || |  ||||||| |||||||||| | ||| ||| ||  ||||||||    
T  9436666 gattgatatgataataaataagtatattgcgggactaatatgacaatattaacaaaatattttaacataaatgactattctgaataacatagtgcacaat 9436765  T
Q  250 caaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    ||   | ||||||||||||| |||  |  || ||| |||||||| || | ||||| |||||||| ||||||||    
T  9436766 cagtgactattttaaaatttcgatccattgagagactattgtgactactcgttacctattcagagactaaaat 9436838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 274
Target Start/End: Original strand, 25085024 - 25085135
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtatttt 262  Q
    ||||||||||||||||   || ||||||||||||||||| ||    ||||||  | || ||||| ||||||||| |   |||||||||||||||||||||    
T  25085024 ataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaaaagtatttt 25085123  T
Q  263 aaaattttgata 274  Q
    ||||||||||||    
T  25085124 aaaattttgata 25085135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 9762617 - 9762663
Alignment:
Q  228 tttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||    
T  9762617 tttgactaatatagtgcacaatcaaaaactattttaaaattttgata 9762663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 21021037 - 21021143
Alignment:
Q  168 taagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaat 267  Q
    |||||||||||  |||||||||||| |||| |||  | |  ||||||  | |||||||| |||||||||||  ||||| |||||| || |||||||||||    
T  21021037 taagtatattgaaggactaatatgataataataacgaaatattttaatgttaatgactattttgactaataaaatgcataatcaataactattttaaaat 21021136  T
Q  268 tttgata 274  Q
    |||||||    
T  21021137 tttgata 21021143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 201
Target Start/End: Complemental strand, 515935 - 515855
Alignment:
Q  121 tgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||||||| |||||| |||||| || | |||| || | ||  ||||||| || ||||||||||||||||||||||    
T  515935 tgatatgacaataagtaagtacttataatgactgatatgataacaaacaagtataatgagggactaatatgacaatattaa 515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 921498 - 921447
Alignment:
Q  223 actactttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    |||||||||||||| || || |||||||||| | ||||||||||||||||||    
T  921498 actactttgactaaaataatacacaatcaaatattattttaaaattttgata 921447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 998622 - 998679
Alignment:
Q  219 aatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    ||||||| |||||||||| || ||||||||| | | | ||||||||||||||||||||    
T  998622 aatgacttctttgactaaaataatgcacaattagatattattttaaaattttgatata 998679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 21926658 - 21926602
Alignment:
Q  209 ttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaa 265  Q
    ||||||| |||||||||| |||||||||||| |  |||||||||| | |||||||||    
T  21926658 ttttaacgtaaatgactattttgactaatataacacacaatcaaatactattttaaa 21926602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 24285180 - 24285104
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||||||  ||||||||| || | |||| || |||||||||||||||    || |||||||||||||||||    
T  24285180 atgacaataattagatatttataaggactgatatgataataagtaagtatattaaatgattaatatgacaatattaa 24285104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 6541209 - 6541133
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||| |||||||||||||||| | |||| |  ||||||||||||||||  |||||||||||||||||||||    
T  6541209 atgacaataagtaagtatttataaagactgatatgacaataagtaagtatattgaaggactaatatgacaatattaa 6541133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 38445022 - 38445125
Alignment:
Q  74 ttgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaagta 173  Q
    |||||||||| |||||| | ||||| ||||| | |||||  | |||||||||||||||||| |||||| ||||| ||||| |||| ||  ||||||||||    
T  38445022 ttgaaatagtccttcaatgctgacaataactcttttcatataggaattgatatgacaataagtaagtacttatagagattgatatgatagtaagtaagta 38445121  T
Q  174 tatt 177  Q
    ||||    
T  38445122 tatt 38445125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 12626923 - 12627001
Alignment:
Q  121 tgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatatt 199  Q
    ||||||||||||||  |||||||||||||||||||||| ||  ||| ||||||||||| | |||| |||||||| ||||    
T  12626923 tgatatgacaataaacaagtatttataaagattaatatgatagtaaataagtatattgagcgactgatatgacagtatt 12627001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 7152023 - 7151942
Alignment:
Q  120 ttgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||| ||||||| || ||||| |||  ||||||||| || |||||||||||||||    ||||||||||||||||||||    
T  7152023 ttgatataacaataaatatgtattcatattgattaatatgataataagtaagtatattaaaagactaatatgacaatattaa 7151942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 26515306 - 26515202
Alignment:
Q  94 tgacattaactatattcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgac 193  Q
    ||||| ||||| | |||||  ||||| ||| |||||||  | |||||| ||||||||||| ||||||  |||| ||||||||| |  |||||||||||||    
T  26515306 tgacaataactcttttcatatatgaactgaaatgacaacgagtaagtacttataaagattgatataacaataattaagtatatcgaaggactaatatgac 26515207  T
Q  194 aatat 198  Q
    |||||    
T  26515206 aatat 26515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 30519244 - 30519185
Alignment:
Q  123 atatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtggga 183  Q
    |||||||||||| |||||||||||| ||||| |||| | ||||||||||||||||| ||||    
T  30519244 atatgacaataaataagtatttatagagattgatatga-cataagtaagtatattgaggga 30519185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 12436960 - 12437010
Alignment:
Q  241 atgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgt 291  Q
    |||||||||||| || |||||| ||||||||||||||  ||||||||||||    
T  12436960 atgcacaatcaataactattttgaaattttgatataatcaaagattattgt 12437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 30050386 - 30050308
Alignment:
Q  244 cacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    |||||||| | | |||||||||||| ||||| |  |||  |||||||||| ||||||||||| ||||||| ||||||||    
T  30050386 cacaatcagagactattttaaaattatgatacattgaagaattattgtgactatttgttacacattcagacactaaaat 30050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 276
Target Start/End: Original strand, 46187355 - 46187389
Alignment:
Q  242 tgcacaatcaaaaagtattttaaaattttgatata 276  Q
    |||||||||||||| ||||||||||||||||||||    
T  46187355 tgcacaatcaaaaattattttaaaattttgatata 46187389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 14926405 - 14926344
Alignment:
Q  209 ttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaatttt 270  Q
    ||||||| | |||||||||||||||||| ||  ||||||||||  || ||||||||||||||    
T  14926405 ttttaacatcaatgactactttgactaacatagtgcacaatcagtaactattttaaaatttt 14926344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 16192261 - 16192342
Alignment:
Q  241 atgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    ||||||||||| ||| |||||||||||||||||| |  ||| || |||| ||| || |||||||| |||||  |||||||||    
T  16192261 atgcacaatcagaaactattttaaaattttgatacattgaaggaatattatgactacttgttacacattcaagtactaaaat 16192342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 39162555 - 39162467
Alignment:
Q  180 gggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattt 269  Q
    ||||||||||||||||| | |  ||| | |||||||  ||||||||| ||||||||| || |||| |||||||||| |||||| ||||||    
T  39162555 gggactaatatgacaatttaacgaagta-ttttaacacaaatgactattttgactaacataatgcgcaatcaaaaactattttgaaattt 39162467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 51273342 - 51273419
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||||||| |||||| |||||| || |  ||| |  |||||||| ||||||| | |||||||||||||||||||||    
T  51273342 atgacaataagtaagtacttataaggacttgtatgacaataagtaaatatattgagtgactaatatgacaatattaat 51273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 45681337 - 45681178
Alignment:
Q  115 atgaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaa 214  Q
    |||||||||||||||||||| ||||||||||||| || | |||| |  |||| || ||| |||| ||||||||||||| ||||||||  | |  ||||||    
T  45681337 atgaattgatatgacaataagtaagtatttataatgactgatatgacaataaatacgtaaattgggggactaatatgataatattaaagaaacattttaa 45681238  T
Q  215 cttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    | |||  ||||| ||||| ||||||   ||||||||||  | |||||| |||||||||||    
T  45681237 cataagagactattttgattaatatagcgcacaatcaaggactattttgaaattttgata 45681178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 3941844 - 3941673
Alignment:
Q  31 agtctttaattatacattttgttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgaca 130  Q
    |||| ||||||  ||||||||||||| |||||||||| ||||||||||||| |   |||||  | ||| ||||| | |||||  |   | | | |||| |    
T  3941844 agtccttaattgaacattttgttagtcaaaatagtctctaacattgaaataatctctcaacactcacaataactcttttcatataaagactaacatgata 3941745  T
Q  131 ataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||| ||||||| ||||| || | |||| || ||||||| ||||||||  ||||||||||||||||||||||    
T  3941744 ataagtaagtatatataacgactgatatgataataagtaggtatattgaaggactaatatgacaatattaat 3941673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 46008600 - 46008648
Alignment:
Q  33 tctttaattatacattttgttagtgaaaatagtctataacattgaaata 81  Q
    ||||||||||| |||||||||||| |||||||||| ||||||| |||||    
T  46008600 tctttaattatgcattttgttagttaaaatagtctttaacattaaaata 46008648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 31186677 - 31186736
Alignment:
Q  245 acaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttac 304  Q
    ||||||||||| |||||||||||||||||||| | | ||| ||||||||| ||| |||||    
T  31186677 acaatcaaaaactattttaaaattttgatatatcaagagactattgtgatcattggttac 31186736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 1324563 - 1324497
Alignment:
Q  257 tattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaata 323  Q
    |||||||||||||||||| | |||| |||||||||||||| |  ||||| ||||| | |||||||||    
T  1324563 tattttaaaattttgatacatcgaaggattattgtgattactcattacacattcaaaaactaaaata 1324497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 53705847 - 53705929
Alignment:
Q  119 attgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||| |||||| ||| ||||||||||||| || | ||| ||  ||||||||||||||||    |||||||||||||||||||    
T  53705847 attgaaatgacattaagtaagtatttataaggactgatacaacgataagtaagtatattgaataactaatatgacaatattaa 53705929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 11508164 - 11508076
Alignment:
Q  188 tatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    ||||||||| |||| ||||  ||||||  |||||||||| ||||||||| ||  | |||||| | | | ||||||||||||||||||||    
T  11508164 tatgacaatgttaacaagatattttaatgtaaatgactattttgactaacatcgtacacaattagatattattttaaaattttgatata 11508076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 34105366 - 34105286
Alignment:
Q  242 tgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    |||| ||||||||| |||||| ||||||||||| |  ||| ||||||| ||| || || ||||||||| ||| ||||||||    
T  34105366 tgcataatcaaaaactattttgaaattttgatacactgaacgattattatgactacttcttacatatttagagactaaaat 34105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 37326767 - 37326839
Alignment:
Q  164 taagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaa 236  Q
    ||||||| ||||||| | || |||||||||||||||||  |   |||||||| |||||||||| |||||||||    
T  37326767 taagtaaatatattgagtgattaatatgacaatattaacgattttttttaacataaatgactattttgactaa 37326839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 40954453 - 40954529
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||| ||| || | |||| ||||||||| |  ||||||||||||||||    |||||||||||||||||||    
T  40954453 atgacaataagtaactactcataaggattaatatgacaataagtaagtatattgaaacactaatatgacaatattaa 40954529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 27001321 - 27001244
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    ||||||||||||||||||||||||||| | |||| |  ||||||||||||||||  ||  ||||||||||||||||||    
T  27001321 atgacaataattaagtatttataaagactgatatgacaataagtaagtatattgacggggtaatatgacaatattaat 27001244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 229 - 305
Target Start/End: Original strand, 19342521 - 19342597
Alignment:
Q  229 ttgactaatatgatgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttaca 305  Q
    ||||||||||| ||||||||||||||| |||||||||||||| |||||  || ||||||||||| ||| | ||||||    
T  19342521 ttgactaatataatgcacaatcaaaaactattttaaaattttaatatattgatagattattgtggttactcgttaca 19342597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 42525279 - 42525385
Alignment:
Q  52 ttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtatttataaaga 151  Q
    ||||| |||||||| | | ||||||||||||| | |||| | ||||||||||||||||||| || | ||||||| |||  ||||||||| ||||||| ||    
T  42525279 ttagtcaaaatagtttctgacattgaaatagtccatcaatgctgacattaactatattcatacaaggattgataggaccgtaattaagtgtttataagga 42525378  T
Q  152 ttaatat 158  Q
     ||||||    
T  42525379 ctaatat 42525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 3709394 - 3709318
Alignment:
Q  126 tgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    ||||||||| |||||||||| |  || | |||||| ||||||||||||| ||| ||||||||||| |||||||||||    
T  3709394 tgacaataagtaagtatttacatggactgatataaccataagtaagtatgttgagggactaatattacaatattaat 3709318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 8206194 - 8206271
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||||| | || ||| |||||| |||| |||| || ||||||||||||||||  ||| ||||||||||||||||||    
T  8206194 atgacaattagtaggtacttataaggattcatatgataataagtaagtatattgaaggattaatatgacaatattaat 8206271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 28297490 - 28297567
Alignment:
Q  228 tttgactaatatgatgcacaatcaaaaagtattttaaaattttgatataacgaaagattattgtgattatttgttaca 305  Q
    |||||||||||  ||| | |||||| || ||||||||||| ||||||||  ||| || ||||||||||||||||||||    
T  28297490 tttgactaataaaatgtataatcaacaactattttaaaatgttgatatattgaatgactattgtgattatttgttaca 28297567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 274
Target Start/End: Complemental strand, 463295 - 463185
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtatttt 262  Q
    |||||||||||||||| ||||||||| |||| ||||||| || | |||||||| |||  ||||| ||| ||||| || |  |||||||| | | |||||     
T  463295 ataagtaagtatattgagggactaatgtgactatattaacaaaactttttaacgtaagggactattttaactaacat-agtcacaatcagatactatttc 463197  T
Q  263 aaaattttgata 274  Q
    ||||||||||||    
T  463196 aaaattttgata 463185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 33204526 - 33204403
Alignment:
Q  79 atagttcttcaacgatgacattaactatattcattcatgaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattg 178  Q
    |||||||||||| ||||||||||| | | |||||  |  |||| |||||| | ||| ||||||||||||| || |||||| |  |||| |||||||||||    
T  33204526 atagttcttcaatgatgacattaattcttttcatataaaaattcatatgatagtaaataagtatttataaggactaatatgaagataaataagtatattg 33204427  T
Q  179 tgggactaatatgacaatattaat 202  Q
     | |  |||||| |||||||||||    
T  33204426 agaggttaatataacaatattaat 33204403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 8814187 - 8814225
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  8814187 ataagtaagtatattgggagactaatatgacaatattaa 8814225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 32518078 - 32518004
Alignment:
Q  32 gtctttaattatacattttgttagtgaaaatagtctataacattgaaatagttcttcaacgatgacattaactat 106  Q
    |||| ||||| ||||||| |||||| |||||||||    || |||||||||||| |||| |||||||||||||||    
T  32518078 gtctctaattgtacatttggttagtcaaaatagtcatcgactttgaaatagttcatcaatgatgacattaactat 32518004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 274
Target Start/End: Original strand, 18080350 - 18080497
Alignment:
Q  127 gacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgacta 226  Q
    |||| ||| ||| ||||||||  |||| |||| || ||||||||| |||||| |||| |||||||||||||||||  |    |||||  ||||| |||||    
T  18080350 gacagtaactaaatatttatatggattgatatgataataagtaagcatattgagggattaatatgacaatattaacgaatcattttattttaaaggacta 18080449  T
Q  227 ctttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
     ||| | ||| ||  |||||||||||||| |||||| |||||||||||    
T  18080450 ttttcaataacatagtgcacaatcaaaaaatattttgaaattttgata 18080497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 17488132 - 17488238
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtatttt 262  Q
    |||||||||||||||| |||||||||||||| |||||||  | |  ||||||| |||||| ||| |||||| || || || |||||||||  | ||||||    
T  17488132 ataagtaagtatattgagggactaatatgacgatattaacgaaacattttaacataaatggctattttgaccaacataattcacaatcaaggactatttt 17488231  T
Q  263 aaaattt 269  Q
     ||||||    
T  17488232 gaaattt 17488238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 276
Target Start/End: Original strand, 31824258 - 31824352
Alignment:
Q  182 gactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    ||||||||||||||||||| | |||  ||||||  |||| ||||| |||||||||||| |   |||| |||| | ||||||||||||||||||||    
T  31824258 gactaatatgacaatattattgagacattttaatataaaagactattttgactaatataacatacaaacaaatattattttaaaattttgatata 31824352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 6915500 - 6915565
Alignment:
Q  209 ttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    ||||||| ||||  |||| ||||| ||| || ||||||||||||||| ||||||||||||||||||    
T  6915500 ttttaacgtaaagaactattttgattaacataatgcacaatcaaaaattattttaaaattttgata 6915565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 33590165 - 33590100
Alignment:
Q  257 tattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    ||||||| |||||| ||| |  || ||| ||||||||||||||||| |||||||||||||||||||    
T  33590165 tattttacaattttaatacattgagagactattgtgattatttgttgcatattcagatactaaaat 33590100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 36469519 - 36469472
Alignment:
Q  229 ttgactaatatgatgcacaatcaaaaagtattttaaaattttgatata 276  Q
    |||||||||||  || ||||||||||| ||||||||||||||||||||    
T  36469519 ttgactaatatagtgtacaatcaaaaactattttaaaattttgatata 36469472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 266
Target Start/End: Complemental strand, 42659970 - 42659867
Alignment:
Q  163 ataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgactactttgactaatatgatgcacaatcaaaaagtatttt 262  Q
    ||||||||||||||||   |||||||||||||||||| || | |  ||||||  | || ||| ||||||||||||    |||||||||||||| ||||||    
T  42659970 ataagtaagtatattgaatgactaatatgacaatattgatgaaacattttaatatcaaagacaactttgactaatggattgcacaatcaaaaattatttt 42659871  T
Q  263 aaaa 266  Q
    ||||    
T  42659870 aaaa 42659867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 7604098 - 7603949
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgac 224  Q
    |||||||||| ||| ||| |||||||| || ||| |  |||||||| |||||||   || |||||||||||||||||| |||  ||| ||  | |  |||    
T  7604098 atgacaataagtaaatatatataaagactagtatgacaataagtaaatatattgaaagattaatatgacaatattaatgagacatttcaatattagagac 7603999  T
Q  225 tactttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    || |||||| ||     |||||||||||||| ||||||||||||||||||    
T  7603998 tattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgata 7603949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 28802356 - 28802291
Alignment:
Q  257 tattttaaaattttgatataacgaaagattattgtgattatttgttacatattcagatactaaaat 322  Q
    |||||||||||||||||| | |||  || |||||||| ||||||||||| ||||||  ||||||||    
T  28802356 tattttaaaattttgatacatcgatggactattgtgactatttgttacacattcagcgactaaaat 28802291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 33508583 - 33508660
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaat 202  Q
    |||||||||| ||||||  |||||  | | ||||||| ||||||||||||||||  ||||||||| || |||||||||    
T  33508583 atgacaataagtaagtacatataataactgatataataataagtaagtatattgaaggactaatacgataatattaat 33508660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 204
Target Start/End: Complemental strand, 23356513 - 23356449
Alignment:
Q  140 tatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataa 204  Q
    |||||||||||| | ||||||| |||| |||||||||||  ||| |||||| ||| |||||||||    
T  23356513 tatttataaagactgatataataataactaagtatattgaaggaataatataacagtattaataa 23356449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 15444 - 15497
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattg 178  Q
    |||| ||||| |||||||||||||||| |||| |||| ||||||||||||||||    
T  15444 atgaaaataaataagtatttataaagactaatgtaataataagtaagtatattg 15497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 21805 - 21721
Alignment:
Q  117 gaattgatatgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaa 201  Q
    ||||||| |||||||||| |||||| ||||||||||| | ||  | |||| |||||||||||  ||| |||||||| ||||||||    
T  21805 gaattgaaatgacaataaataagtacttataaagattgacatgctaataactaagtatattgaaggattaatatgaaaatattaa 21721  T

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Target: scaffold0687 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 1782 - 1633
Alignment:
Q  125 atgacaataattaagtatttataaagattaatataatcataagtaagtatattgtgggactaatatgacaatattaataagaatttttaacttaaatgac 224  Q
    |||||||||| ||| ||| |||||||| || ||| |  |||||||| |||||||   || |||||||||||||||||| |||  ||| ||  | |  |||    
T  1782 atgacaataagtaaatatatataaagactagtatgacaataagtaaatatattgaaagattaatatgacaatattaatgagacatttcaatattagagac 1683  T
Q  225 tactttgactaatatgatgcacaatcaaaaagtattttaaaattttgata 274  Q
    || |||||| ||     |||||||||||||| ||||||||||||||||||    
T  1682 tattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgata 1633  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 226621 - 226662
Alignment:
Q  117 gaattgatatgacaataattaagtatttataaagattaatat 158  Q
    |||||||||||| ||||| |||||| ||||||||||||||||    
T  226621 gaattgatatgaaaataaataagtacttataaagattaatat 226662  T

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