View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_36 (Length: 409)
Name: NF5921_low_36
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 108 - 402
Target Start/End: Original strand, 39044150 - 39044444
Alignment:
| Q |
108 |
gttacctacggtggcagagttgtaagtagtcattccgggctggcccacattagcagaaccggtaataaccgtcttcccgattccatcacctaaaaacacc |
207 |
Q |
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| T |
39044150 |
gttacctacggtggcagagttgtaagtagtcattccgggctggcccacattagcagaaccggtaataaccgtcttcccgattccatcacctaaaaacacc |
39044249 |
T |
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| Q |
208 |
acatttctcttctccaacggaaccctaacggtttcctcataaaccccttctttgatatatatgacaaatctcttcccgtcaacgccgttatccggcgcag |
307 |
Q |
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| T |
39044250 |
acatttctcttctccaacggaaccctaacggtttcctcataaaccccttctttgatatatatgacaaacctcttcctgtcaacgccgttatccggcgcag |
39044349 |
T |
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| Q |
308 |
cattaacagcttcttgcaccgtcttataacaaccattcttccctcccttacacactgtaacatccggcgtcaacttcgccggaatccctatgcta |
402 |
Q |
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| T |
39044350 |
cattaacagcttcttgcaccgtcttataacaacccttctcccctcccttacacactgtaacatccggcgtcaacttcgccggaatccctacgcta |
39044444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 280
Target Start/End: Original strand, 43834413 - 43834539
Alignment:
| Q |
154 |
acattagcagaaccggtaataaccgtcttcccgattccatcacctaaaaacaccacatttctcttctccaacggaaccctaacggtttcctcataaaccc |
253 |
Q |
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||||||| ||| || |||||||| ||||| || || |||||||| |||| ||| ||||| |||||| |||||||||||||| | || |||||||||| |
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| T |
43834413 |
acattagaagagccagtaataacagtcttaccaatgccatcacccaaaagcacaacattcctcttccttaacggaaccctaaccctctcttcataaaccc |
43834512 |
T |
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| Q |
254 |
cttctttgatatatatgacaaatctct |
280 |
Q |
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| T |
43834513 |
cttcctttatatgtatcacaaatctct |
43834539 |
T |
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