View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_37 (Length: 409)
Name: NF5921_low_37
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 174 - 399
Target Start/End: Complemental strand, 6319788 - 6319562
Alignment:
| Q |
174 |
tttactttacatcaataagaaatacttatgatgtgtgtacctcttgtatgtgttagacatgtgatatgaaatacaagagtttatgtttggaaaaaattaa |
273 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6319788 |
tttactttacatcaataagaaatactcatgatgtgtgtacctcttgtatgtgttagacatgtgatatgaaatacaagagtttatgtttggaaaaagttaa |
6319689 |
T |
|
| Q |
274 |
ttaataacaccaaggtttgtgcaaatctagtagtgcaaatttgcaatatggcatggcaaaaacaagac-gtgctgaaaaagcaatgcaagttaacgattt |
372 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6319688 |
ttaataacaccaaggtttgtgcaaatctagtagtgtaaatttgcaatatggcatggcaaaaacaagacagtgctgaaaaagcaatgcaagttaacgattt |
6319589 |
T |
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| Q |
373 |
tataatcatttgttttttcaagatatt |
399 |
Q |
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||||| |||||| |||||||||||||| |
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| T |
6319588 |
tataaccatttggtttttcaagatatt |
6319562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 6350858 - 6350682
Alignment:
| Q |
18 |
aggattgacttgccgaggcattcctaatagtatctccatctaaagtggatcatggttgttgtgttgctgctttgaataacagatgtgaaggaattccatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6350858 |
aggattgacttgccgaggcattcctaatagtatctccatctaaagtggatcatggttgttgtgttgctgctttgaataacagatgtgaaggaattccatt |
6350759 |
T |
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| Q |
118 |
ccctcacttcctacttacgatcatgttattatgtatgtttgttttattgttaatgttttactttacatcaataagaa |
194 |
Q |
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| T |
6350758 |
ccctcacttcctacttacgatcatgttattatgtatgtttgttttattgttaatgttttactttacatcaataagaa |
6350682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 6287320 - 6287207
Alignment:
| Q |
18 |
aggattgacttgccgaggcattcctaatagtatctccatctaaagtggatcatggttgttgtgttgctgctttgaataacagatgtgaaggaattccatt |
117 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| | || ||||||| ||| |
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| T |
6287320 |
aggattgacttgcagaggcattcccaatagtatctccatctaaattgggtcatggttattgtgttgctgctttgaataacagacgagacggaattctatt |
6287221 |
T |
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| Q |
118 |
ccctcacttcctac |
131 |
Q |
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||||||| |||||| |
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| T |
6287220 |
ccctcacctcctac |
6287207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 309
Target Start/End: Complemental strand, 6330259 - 6330114
Alignment:
| Q |
170 |
atgttttactttacatcaataagaaatacttatgatgtgtgtacctcttgtatgtgttagacatgtgat------atgaaatacaagagtttatgtttgg |
263 |
Q |
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|||||||||| |||||||||||||| | |||| ||||||| |||||||||||||||| | ||||||||| ||||||| || |||||| |||||| |
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| T |
6330259 |
atgttttactatacatcaataagaagttcttaagatgtgtttacctcttgtatgtgtaatacatgtgatatgataatgaaatgcattagtttaagtttgg |
6330160 |
T |
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| Q |
264 |
aaaaaattaattaataacaccaaggtttgtgcaaatctagtagtgc |
309 |
Q |
| |
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||||||| ||||||| || |||||||||||||||| |||||||||| |
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| T |
6330159 |
aaaaaatgaattaatgaccccaaggtttgtgcaaacctagtagtgc |
6330114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 6330410 - 6330366
Alignment:
| Q |
18 |
aggattgacttgccgaggcattcctaatagtatctccatctaaag |
62 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6330410 |
aggattgacttgcagaggcattcctaatagtatctccatctaaag |
6330366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 6273069 - 6273026
Alignment:
| Q |
18 |
aggattgacttgccgaggcattcctaatagtatctccatctaaa |
61 |
Q |
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||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
6273069 |
aggattgacttgcagaggcattcctaacagtatctccatctaaa |
6273026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 6287200 - 6287162
Alignment:
| Q |
156 |
ttgttttattgttaatgttttactttacatcaataagaa |
194 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||| |
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| T |
6287200 |
ttgttttattgttaatgttttacttaaaatcaataagaa |
6287162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 6319948 - 6319910
Alignment:
| Q |
18 |
aggattgacttgccgaggcattcctaatagtatctccat |
56 |
Q |
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| T |
6319948 |
aggattgactggcagaggcattcctaatagtatctccat |
6319910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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