View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_39 (Length: 406)
Name: NF5921_low_39
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 1780400 - 1780659
Alignment:
| Q |
21 |
ccataaataatgcatattatatacaagattccgggttcaaatctcagttacacnnnnnnnnnctcacggaacacgtctatttcgtttattacatcaaaaa |
120 |
Q |
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| T |
1780400 |
ccataaataatgcatattatatacaagattcaag-ttcaaatctcggttac---caaaaaaactcacggaacacatctatttcgtttattacatcaaaaa |
1780495 |
T |
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| Q |
121 |
ttggaaaacaagaaaaagagtaaaataaagagagtagatggaatgccacgttatacaaaaggggtaggtagggcccacagtccacaccaccaaagccaaa |
220 |
Q |
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| T |
1780496 |
ttggaaaacaagaaaaagagtaaaataaagagagtagatggaatgccacgttatacaaaaggggtaggtagggcccacagtccacaccaccaaagccaaa |
1780595 |
T |
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| Q |
221 |
actcctttggctttaggtttgtttgtcaacaccaacacaacaaacaaagacaatatataaaccc |
284 |
Q |
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| T |
1780596 |
actcctttggctttaggtttgtttgtcaacaccaacacaaccaacaaagacaatatataaaccc |
1780659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 1780723 - 1780773
Alignment:
| Q |
348 |
aacacaaactctctctcaatccctttttcttcgcaaccacatcttcatctc |
398 |
Q |
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| T |
1780723 |
aacacaaactctctctcaatccctttttcttcgcaaccacatcttcatctc |
1780773 |
T |
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