View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_42 (Length: 372)
Name: NF5921_low_42
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 4384807 - 4384677
Alignment:
| Q |
1 |
catcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaa |
100 |
Q |
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| T |
4384807 |
catcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggatagaa |
4384708 |
T |
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| Q |
101 |
tgttggtttatgagttaatgagcagggacaa |
131 |
Q |
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| T |
4384707 |
tgttggtgcatgagttaatgagcagtgacaa |
4384677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 4111190 - 4111291
Alignment:
| Q |
207 |
tatttaaagaaaaaccatgagattttcattggcaatatcttacaagtttcacatccactgataaagtctctgaattattcagaactgaactatcatattt |
306 |
Q |
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| T |
4111190 |
tatttaaagaaaaaccatgagattttcatttgcaatatcttacaagtttcacatccactgctaaagtctcagaatt-ttcagaactgaactatcatattt |
4111288 |
T |
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| Q |
307 |
gat |
309 |
Q |
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||| |
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| T |
4111289 |
gat |
4111291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 4384661 - 4384590
Alignment:
| Q |
282 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatatatcatcat |
353 |
Q |
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| T |
4384661 |
tattcagaactgaactatcatatttgatccactttcccttgtgctaaagaaaaacctgaaatatatcatcat |
4384590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4110402 - 4110454
Alignment:
| Q |
1 |
catcttgtaatgtcattgctgttaagagaatggatcgggaaaaccggccacaa |
53 |
Q |
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| T |
4110402 |
catcttgtaatgtcattgctgttaagagaatggatcggtaaaaccggccacaa |
4110454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 4107224 - 4107305
Alignment:
| Q |
40 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatga |
121 |
Q |
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| T |
4107224 |
aaaacctgccacaaaaacttggtcaagttgattggatactgtgatgagggaatgcatagaatgttggtatatgagttcatga |
4107305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 4130405 - 4130489
Alignment:
| Q |
40 |
aaaaccggccacaaaaacttggtaaagttgataggatagtgtgatgaaggaatggattgaatgttggtttatgagttaatgagca |
124 |
Q |
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| T |
4130405 |
aaaacctgccacaaaaacttggtaaggttggttggattttgtgatgaaggattgcatagaatgttagtatatgagttcatgagca |
4130489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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