View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_47 (Length: 353)
Name: NF5921_low_47
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 9348676 - 9348473
Alignment:
| Q |
1 |
atggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttgttgcaactggctcagatgctgaatcttctgagtt |
100 |
Q |
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| T |
9348676 |
atggcatcttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcctgtttgttgcagctggctcagatgctgaatcttctgagtt |
9348577 |
T |
|
| Q |
101 |
tgaatctgaatgattggattggtccacaatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgtt |
200 |
Q |
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| T |
9348576 |
tgaatctgaatgattggattggtccgcaatataaactaaaacatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgtt |
9348477 |
T |
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| Q |
201 |
aaat |
204 |
Q |
| |
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|||| |
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| T |
9348476 |
aaat |
9348473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 9361653 - 9361533
Alignment:
| Q |
8 |
cttaatcttatctcccacattttcactgtcccccaaaattaatccattgttcttgtttgttgcaactggctcagatgctgaatcttctgagtttgaatct |
107 |
Q |
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| T |
9361653 |
cttaatcttatctctaacattttcactttcccccaaaattgatccattgttcatgtttgttgcaactgactcagatactgaaacttctgagtttgaatat |
9361554 |
T |
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| Q |
108 |
gaatgattggattggtccaca |
128 |
Q |
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| T |
9361553 |
gaatgattggattggtccaca |
9361533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 141 - 331
Target Start/End: Complemental strand, 9356608 - 9356413
Alignment:
| Q |
141 |
acatgagagaaaataacaaatttttcaagcaatttaaaggattaaatgaaaattattgttaaatgaggttaatgcaacttcaatcgaagttgcaaagaca |
240 |
Q |
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||||||||||| || |||| ||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||| ||||| | |
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| T |
9356608 |
acatgagagaagattgcaaaattttcaagcaatttaaaggtttaaatgagaatcgttgttaaatgaggccgatgcagcttcaatcgaagttgtaaagaaa |
9356509 |
T |
|
| Q |
241 |
tgaaaaaatca-----gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacc |
331 |
Q |
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| T |
9356508 |
taaaaaaaaaaaatttgatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacc |
9356413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 9356928 - 9356796
Alignment:
| Q |
1 |
atggcatcttaatcttatctcccacattttcactgtcccccaaaattaatcc---attgttcttgtttgttgcaactggctcagatgctgaatcttctga |
97 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||| ||||||||||| | | |||||||| |||| ||||||| |
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| T |
9356928 |
atggcatcttaatcttatctcccacattttcactatcccctaaaattgatccattattgttcatgtttgttgcagcagactcagatgttgaaccttctga |
9356829 |
T |
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| Q |
98 |
gtttgaatctgaatgattggattggtccacaat |
130 |
Q |
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||||||||||||| ||||||||||||| |||| |
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| T |
9356828 |
gtttgaatctgaaatattggattggtccgcaat |
9356796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 9348467 - 9348388
Alignment:
| Q |
252 |
gatatttcaattattgtcgtagtcgcggaccaatattaaaaattgtttgataagctaaaataaaggattcaaagtatacc |
331 |
Q |
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|||||| |||||||||| ||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
9348467 |
gatattgcaattattgttctagccgcggaccaatatttaaaattgtttgataagataaactaaaggattcaaagtatacc |
9348388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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