View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_48 (Length: 351)
Name: NF5921_low_48
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 38040039 - 38040277
Alignment:
| Q |
9 |
tattttctaatatatttttccttaatataaaactcactgtaatcatgtgctgtgttgtttaaccattttggcctgattaattannnnnnnn---gccata |
105 |
Q |
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| T |
38040039 |
tattttctaatatatttttccttaatataaaactcactgtaatcatgtgctatgttgtttaaccattttggcctgattaattttttttttttttgccata |
38040138 |
T |
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| Q |
106 |
atggattgcatattattctgccaaaatagttgacattttacatagtccgttgtgatccaaataatttcgatacggcacactctagtctaaagagtggtag |
205 |
Q |
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| T |
38040139 |
atggattgcatattattctgccaaaatagttgacattttacatagtccgttgtgatccaaataatttcgatacggcacactctagtctaaagagtggtag |
38040238 |
T |
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| Q |
206 |
aagaaatcagaactctagctgaaatcttatattatatac |
244 |
Q |
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| T |
38040239 |
aagaaatcagaactctagctgaaatcttatattatatac |
38040277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 38040424 - 38040515
Alignment:
| Q |
242 |
tacaagccaattgtttgatctataatattatgtagaaataataaatctaaaaaggtcgtcgtagtagattcaaagttttgatatgtatacta |
333 |
Q |
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| T |
38040424 |
tacaagccaattgtttgatctataatattatgtagaaataataaatctaaaaaggtcgtcgtagtagattcaaagttttgatatgtatacta |
38040515 |
T |
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