View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_low_51 (Length: 345)
Name: NF5921_low_51
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_51 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 113 - 335
Target Start/End: Complemental strand, 6319785 - 6319562
Alignment:
| Q |
113 |
actttacatcaataagaaatacttatgatgtgtgtacctcttgtatgtgttagacatgtgatatgaaatacaagagtttatgtttggaaaaaattaatta |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6319785 |
actttacatcaataagaaatactcatgatgtgtgtacctcttgtatgtgttagacatgtgatatgaaatacaagagtttatgtttggaaaaagttaatta |
6319686 |
T |
|
| Q |
213 |
ataacaccaaggtttgtgcaaatctagtagtgcaaatttgcaatatggcatggcaaaaacaagac-gtgctgaaaaagcaatgcaagttaacgattttat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6319685 |
ataacaccaaggtttgtgcaaatctagtagtgtaaatttgcaatatggcatggcaaaaacaagacagtgctgaaaaagcaatgcaagttaacgattttat |
6319586 |
T |
|
| Q |
312 |
aatcatttgttttttcaagatatt |
335 |
Q |
| |
|
|| |||||| |||||||||||||| |
|
|
| T |
6319585 |
aaccatttggtttttcaagatatt |
6319562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 6319909 - 6319836
Alignment:
| Q |
1 |
ttaatgagtttcatggtttgttctgttgctttaaataaaatgtgtgaagtagtcaaattacctcatcatggtca |
74 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6319909 |
ttaatgagtttcattgtttgttctgttgctttaaataaaatgtgtgaagtagtcaaattacctcatcatggtca |
6319836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 117 - 245
Target Start/End: Complemental strand, 6330248 - 6330114
Alignment:
| Q |
117 |
tacatcaataagaaatacttatgatgtgtgtacctcttgtatgtgttagacatgtgatatga------aatacaagagtttatgtttggaaaaaattaat |
210 |
Q |
| |
|
|||||||||||||| | |||| ||||||| |||||||||||||||| | ||||||||||||| ||| || |||||| ||||||||||||| ||| |
|
|
| T |
6330248 |
tacatcaataagaagttcttaagatgtgtttacctcttgtatgtgtaatacatgtgatatgataatgaaatgcattagtttaagtttggaaaaaatgaat |
6330149 |
T |
|
| Q |
211 |
taataacaccaaggtttgtgcaaatctagtagtgc |
245 |
Q |
| |
|
|||| || |||||||||||||||| |||||||||| |
|
|
| T |
6330148 |
taatgaccccaaggtttgtgcaaacctagtagtgc |
6330114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University