View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_57 (Length: 316)

Name: NF5921_low_57
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_57
NF5921_low_57
[»] chr3 (24 HSPs)
chr3 (1-123)||(4055230-4055352)
chr3 (1-117)||(4050096-4050212)
chr3 (1-117)||(5481288-5481404)
chr3 (1-121)||(6852748-6852868)
chr3 (1-117)||(6857855-6857971)
chr3 (1-117)||(10672738-10672854)
chr3 (1-117)||(10677851-10677967)
chr3 (1-116)||(8465038-8465153)
chr3 (1-116)||(10584659-10584774)
chr3 (1-122)||(33702394-33702515)
chr3 (1-117)||(10591095-10591211)
chr3 (1-117)||(31081307-31081423)
chr3 (5-117)||(8458604-8458716)
chr3 (1-116)||(1302045-1302160)
chr3 (1-116)||(31076201-31076318)
chr3 (1-121)||(5457812-5457927)
chr3 (1-116)||(49784833-49784949)
chr3 (19-120)||(269483-269584)
chr3 (23-114)||(20891459-20891550)
chr3 (60-117)||(29827829-29827886)
chr3 (65-117)||(18023913-18023965)
chr3 (23-73)||(18023978-18024028)
chr3 (23-116)||(3187246-3187339)
chr3 (62-114)||(18023324-18023376)
[»] chr7 (11 HSPs)
chr7 (1-118)||(12857077-12857194)
chr7 (1-117)||(26051309-26051425)
chr7 (1-117)||(26060668-26060784)
chr7 (1-117)||(26056422-26056538)
chr7 (1-117)||(26065781-26065897)
chr7 (1-117)||(12851964-12852080)
chr7 (1-82)||(14610617-14610698)
chr7 (60-117)||(2248852-2248909)
chr7 (62-116)||(4181276-4181330)
chr7 (60-117)||(37459702-37459759)
chr7 (71-116)||(35352121-35352166)
[»] chr8 (12 HSPs)
chr8 (1-117)||(14318415-14318531)
chr8 (1-117)||(26986789-26986905)
chr8 (1-117)||(34108519-34108635)
chr8 (1-116)||(26981676-26981791)
chr8 (1-116)||(18493978-18494093)
chr8 (1-118)||(14314710-14314827)
chr8 (1-80)||(10340754-10340834)
chr8 (35-116)||(43956651-43956732)
chr8 (69-116)||(10340698-10340745)
chr8 (69-113)||(18608435-18608479)
chr8 (60-116)||(1782181-1782237)
chr8 (43-81)||(18608487-18608525)
[»] chr6 (9 HSPs)
chr6 (1-117)||(21276061-21276177)
chr6 (31-115)||(11182989-11183073)
chr6 (60-116)||(21936408-21936464)
chr6 (39-117)||(20751880-20751957)
chr6 (60-114)||(12909621-12909675)
chr6 (60-114)||(12934728-12934782)
chr6 (31-117)||(21937943-21938029)
chr6 (34-80)||(12909575-12909621)
chr6 (34-80)||(12934682-12934728)
[»] chr5 (13 HSPs)
chr5 (1-117)||(9877339-9877455)
chr5 (1-116)||(9872225-9872340)
chr5 (1-117)||(39904133-39904249)
chr5 (1-117)||(39909246-39909362)
chr5 (34-122)||(13556099-13556187)
chr5 (36-111)||(24091794-24091869)
chr5 (23-80)||(2024354-2024411)
chr5 (60-117)||(43540563-43540620)
chr5 (69-117)||(2024420-2024468)
chr5 (65-117)||(4555967-4556019)
chr5 (59-116)||(35368623-35368680)
chr5 (34-80)||(43540620-43540666)
chr5 (43-84)||(43401906-43401947)
[»] chr4 (24 HSPs)
chr4 (1-117)||(35091203-35091319)
chr4 (1-116)||(35096316-35096431)
chr4 (1-116)||(32429034-32429150)
chr4 (1-117)||(3424113-3424229)
chr4 (39-117)||(34279253-34279331)
chr4 (60-123)||(47071758-47071821)
chr4 (59-117)||(22119073-22119131)
chr4 (34-107)||(54858987-54859060)
chr4 (1-72)||(3409393-3409465)
chr4 (1-80)||(18716827-18716907)
chr4 (1-80)||(18737500-18737580)
chr4 (1-65)||(18671177-18671242)
chr4 (60-116)||(14643526-14643582)
chr4 (69-116)||(3409329-3409376)
chr4 (58-116)||(25618050-25618108)
chr4 (34-118)||(34128120-34128205)
chr4 (60-116)||(34601825-34601881)
chr4 (63-112)||(18737586-18737634)
chr4 (60-116)||(30019638-30019692)
chr4 (34-80)||(14643582-14643628)
chr4 (74-112)||(18716920-18716958)
chr4 (34-80)||(30019692-30019738)
chr4 (34-80)||(47071712-47071758)
chr4 (39-75)||(34601886-34601922)
[»] chr1 (24 HSPs)
chr1 (1-117)||(28574585-28574701)
chr1 (1-117)||(28598597-28598713)
chr1 (1-116)||(3468356-3468471)
chr1 (3-116)||(43359091-43359205)
chr1 (39-119)||(16051511-16051591)
chr1 (5-88)||(3701293-3701377)
chr1 (60-115)||(17414304-17414359)
chr1 (60-114)||(13654676-13654730)
chr1 (60-114)||(35653036-35653090)
chr1 (60-116)||(1188333-1188389)
chr1 (60-110)||(19311180-19311230)
chr1 (5-80)||(17414359-17414435)
chr1 (60-105)||(10186056-10186101)
chr1 (60-103)||(1188178-1188221)
chr1 (62-116)||(3696111-3696165)
chr1 (60-112)||(10186307-10186359)
chr1 (23-78)||(3696169-3696224)
chr1 (34-80)||(19311134-19311180)
chr1 (59-117)||(21430776-21430833)
chr1 (31-80)||(1188129-1188178)
chr1 (63-116)||(35626539-35626591)
chr1 (39-74)||(44523933-44523968)
chr1 (38-80)||(10186359-10186401)
chr1 (36-80)||(35653090-35653134)
[»] chr2 (11 HSPs)
chr2 (1-116)||(14917183-14917298)
chr2 (1-118)||(17719998-17720115)
chr2 (1-117)||(17720326-17720442)
chr2 (1-116)||(39178887-39179002)
chr2 (1-116)||(45120675-45120790)
chr2 (1-116)||(30283251-30283366)
chr2 (62-117)||(42780542-42780597)
chr2 (31-80)||(20892154-20892203)
chr2 (34-116)||(716634-716715)
chr2 (34-80)||(42780494-42780540)
chr2 (68-104)||(20892110-20892146)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-120)||(1816-1935)
[»] scaffold0006 (1 HSPs)
scaffold0006 (60-114)||(144437-144491)
[»] scaffold0005 (2 HSPs)
scaffold0005 (60-116)||(173710-173766)
scaffold0005 (34-80)||(173664-173710)


Alignment Details
Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 4055230 - 4055352
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4055230 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 4055329  T
Q  101 ttggaaatcaccaacaaaaaata 123  Q
    ||||||||||||||||| |||||    
T  4055330 ttggaaatcaccaacaacaaata 4055352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 4050096 - 4050212
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4050096 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 4050195  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  4050196 ttggaaatcaccaacaa 4050212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5481404 - 5481288
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5481404 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 5481305  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  5481304 ttggaaatcaccaacaa 5481288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 6852868 - 6852748
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6852868 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 6852769  T
Q  101 ttggaaatcaccaacaaaaaa 121  Q
    |||||||||||||||| ||||    
T  6852768 ttggaaatcaccaacataaaa 6852748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 6857971 - 6857855
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6857971 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 6857872  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  6857871 ttggaaatcaccaacaa 6857855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10672854 - 10672738
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672854 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 10672755  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  10672754 ttggaaatcaccaacaa 10672738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10677967 - 10677851
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10677967 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 10677868  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  10677867 ttggaaatcaccaacaa 10677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 8465038 - 8465153
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8465038 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 8465137  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  8465138 ttggaaatcaccaaca 8465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 10584774 - 10584659
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10584774 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 10584675  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  10584674 ttggaaatcaccaaca 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 33702515 - 33702394
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33702515 tgtcatggttcattattaataataaataataatgttcctatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 33702416  T
Q  101 ttggaaatcaccaacaaaaaat 122  Q
    |||||||||||||||| |||||    
T  33702415 ttggaaatcaccaacataaaat 33702394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 10591211 - 10591095
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10591211 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 10591112  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||| ||||    
T  10591111 ttggaaatcaccgacaa 10591095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31081423 - 31081307
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31081423 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagtcacaacttttggttctaaagtgattccattatt 31081324  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  31081323 ttggaaatcaccaacaa 31081307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 8458604 - 8458716
Alignment:
Q  5 atggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8458604 atggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttagttctaaagtgattccattattttgg 8458703  T
Q  105 aaatcaccaacaa 117  Q
    |||||||||||||    
T  8458704 aaatcaccaacaa 8458716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 1302160 - 1302045
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1302160 tgtcatggttcattattaataataaataataatgttccaatatatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 1302061  T
Q  101 ttggaaatcaccaaca 116  Q
    |||||||| |||||||    
T  1302060 ttggaaattaccaaca 1302045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 31076318 - 31076201
Alignment:
Q  1 tgtcatggttcattattaata--ataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccatta 98  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31076318 tgtcatggttcattattaatacaataaataataatgttccaatgtatatgaatggtttccatgaagagtcacaacttttggttctaaagtgattccatta 31076219  T
Q  99 ttttggaaatcaccaaca 116  Q
    ||||||||||||||||||    
T  31076218 ttttggaaatcaccaaca 31076201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 5457927 - 5457812
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     |||||||||||    
T  5457927 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttgattcta-----attccattatt 5457833  T
Q  101 ttggaaatcaccaacaaaaaa 121  Q
    |||||||||||||||| ||||    
T  5457832 ttggaaatcaccaacataaaa 5457812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 49784833 - 49784949
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattat 99  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||    
T  49784833 tgtcatggttcattatctatcaataaataataatgttccaatgtatatgaatgatttccatgaagagttacaacttttggttttaaagtgattctattat 49784932  T
Q  100 tttggaaatcaccaaca 116  Q
    |||||||||||||||||    
T  49784933 tttggaaatcaccaaca 49784949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 269483 - 269584
Alignment:
Q  19 ataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaaa 118  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  269483 ataataaataataatgttccaatatatatgaatggtttccataaagagctacaacttttgattctaaagtgattccattattttggaaatcaccaacaaa 269582  T
Q  119 aa 120  Q
    ||    
T  269583 aa 269584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 20891459 - 20891550
Alignment:
Q  23 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20891459 taaataataatttttcaatgtatatgaatgattctcatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 20891550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 29827829 - 29827886
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  29827829 tgaagagttacaacttttgattctaaagtgattccattcttttggaaatcaccaacaa 29827886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 18023965 - 18023913
Alignment:
Q  65 agttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18023965 agttacaacttttggttataaagtgattccattattttggaaatcaccaacaa 18023913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 18024028 - 18023978
Alignment:
Q  23 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaac 73  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  18024028 taaataataatgttccaatgtatatgattgattcctatgaagagttacaac 18023978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 3187339 - 3187246
Alignment:
Q  23 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||| |||||||||| ||||||||| ||| ||| || | |||||||||||| || ||||||||||| ||| ||||  ||||||| ||||    
T  3187339 taaataatattgttccaatgcatatgaatgattctcataaaaaattacaacttttgattttaaagtgattcaattgttttaaaaatcacaaaca 3187246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 18023376 - 18023324
Alignment:
Q  62 aagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    |||| ||||||||||   |||||||||||||||||||||||||||||||||||    
T  18023376 aagacttacaactttcaattctaaagtgattccattattttggaaatcaccaa 18023324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12857077 - 12857194
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12857077 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 12857176  T
Q  101 ttggaaatcaccaacaaa 118  Q
    ||||||||||||||||||    
T  12857177 ttggaaatcaccaacaaa 12857194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26051309 - 26051425
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26051309 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26051408  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  26051409 ttggaaatcaccaacaa 26051425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26060668 - 26060784
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26060668 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26060767  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  26060768 ttggaaatcaccaacaa 26060784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26056422 - 26056538
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26056422 tgtcatggttcattatcaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26056521  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  26056522 ttggaaatcaccaacaa 26056538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26065781 - 26065897
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26065781 tgtcatggttcattatcaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26065880  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  26065881 ttggaaatcaccaacaa 26065897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 12851964 - 12852080
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12851964 tgtcatggttcattattaataataaataataatgtaacaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 12852063  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  12852064 ttggaaatcaccaacaa 12852080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 14610617 - 14610698
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttc 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14610617 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttc 14610698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 2248909 - 2248852
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  2248909 tgaagagttactacttttggttctaaagtgattccattattttagaaatcaccaacaa 2248852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 4181330 - 4181276
Alignment:
Q  62 aagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||| ||||||||| || ||||||||||||||||||||||||||||||||||    
T  4181330 aagagttgcaacttttgattttaaagtgattccattattttggaaatcaccaaca 4181276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 37459759 - 37459702
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||| |||||||| || ||||||||||||||||||||  ||||||| |||||    
T  37459759 tgaagagttaaaacttttgattttaaagtgattccattattttaaaaatcactaacaa 37459702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 35352166 - 35352121
Alignment:
Q  71 aacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||| ||||||||| ||| |||||||| ||||||||||||||    
T  35352166 aacttttgattctaaagtaatttcattatttcggaaatcaccaaca 35352121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14318531 - 14318415
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14318531 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 14318432  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  14318431 ttggaaatcaccaacaa 14318415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26986905 - 26986789
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26986905 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26986806  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  26986805 ttggaaatcaccaacaa 26986789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 34108519 - 34108635
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34108519 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 34108618  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  34108619 ttggaaatcaccaacaa 34108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26981791 - 26981676
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26981791 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 26981692  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  26981691 ttggaaatcaccaaca 26981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 18494093 - 18493978
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18494093 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaattgattccattatt 18493994  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  18493993 ttggaaatcaccaaca 18493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 14314827 - 14314710
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  14314827 tgtcatggttcattattaataataaataataatgttccaatgtatacgaatggttcccattaagagttacaacttttggttctaaagtaattccattatt 14314728  T
Q  101 ttggaaatcaccaacaaa 118  Q
    ||| ||||||||||||||    
T  14314727 ttgaaaatcaccaacaaa 14314710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 10340834 - 10340754
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  10340834 tgtcatggttcattatctatcaataaataataatgttccaatgtatatgaatggtttccatgaagagttacaactcttggt 10340754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 43956732 - 43956651
Alignment:
Q  35 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||||||||| | || |||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  43956732 ttccaatgtatatgaaagatttccatgaagagttacaactcttgattctaaagtgattccattattttaaaaatcaccaaca 43956651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 10340745 - 10340698
Alignment:
Q  69 acaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10340745 acaacttttggttctaaagtgattccattatttgggaaatcaccaaca 10340698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 18608479 - 18608435
Alignment:
Q  69 acaacttttggttctaaagtgattccattattttggaaatcacca 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  18608479 acaacttttagttctaaagtgattccattattttggaaatcacca 18608435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 1782181 - 1782237
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  1782181 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 1782237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 18608525 - 18608487
Alignment:
Q  43 tatatgaatggttcccatgaagagttacaacttttggtt 81  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  18608525 tatatgaatgattcccatgaagagttacaactcttggtt 18608487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 21276061 - 21276177
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276061 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 21276160  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  21276161 ttggaaatcaccaacaa 21276177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 11183073 - 11182989
Alignment:
Q  31 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaac 115  Q
    |||||||||||||||||||| | || ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||    
T  11183073 aatgttccaatgtatatgaaagatttccatgaagagttacaacatttggttctaaattgattccattattttagaaatgaccaac 11182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 21936464 - 21936408
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936464 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 21936408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 20751957 - 20751880
Alignment:
Q  39 aatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||| ||||| ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  20751957 aatgtatatgaaaggttctcatgaagagttacaacttttgat-ctaaagtgaatccattattttggaaatcaccaacaa 20751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 12909621 - 12909675
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12909621 tgaagagttacaacttttggttctaaagtgattccattattttagaaatcaccaa 12909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 12934728 - 12934782
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12934728 tgaagagttacaacttttggttctagagtgattccattattttggaaatcaccaa 12934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 117
Target Start/End: Original strand, 21937943 - 21938029
Alignment:
Q  31 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||||||| |||   ||  ||||||||||||||  || |||||||||| ||||||||||||||||||||||||||||||    
T  21937943 aatgttccaatgtatacgaaatattttcatgaagagttacatattatggttctaaaatgattccattattttggaaatcaccaacaa 21938029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 12909575 - 12909621
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||| ||| |||||| |||||||||| |||||    
T  12909575 gttccaatgtatatgaatgattctcatgaaaagttacaactcttggt 12909621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 12934682 - 12934728
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||| ||| |||||| |||||||||| |||||    
T  12934682 gttccaatgtatatgaatgattctcatgaaaagttacaactcttggt 12934728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9877455 - 9877339
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9877455 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 9877356  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  9877355 ttggaaatcaccaacaa 9877339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 9872340 - 9872225
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9872340 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 9872241  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  9872240 ttggaaatcaccaaca 9872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39904133 - 39904249
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39904133 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattcaattatt 39904232  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  39904233 ttggaaatcaccaacaa 39904249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 39909246 - 39909362
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||    
T  39909246 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggtttacacgaagagttacaacttttggttctaaagtgattccattatt 39909345  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  39909346 ttggaaatcaccaacaa 39909362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 13556187 - 13556099
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaaaaaat 122  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  13556187 gttccaatgtatatgaaagattcccatgaagagttacaactcttggttttaaagtgattccattattttggaaatcaccaacagaaaat 13556099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 24091869 - 24091794
Alignment:
Q  36 tccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcac 111  Q
    ||||||||||||||| | ||| ||| ||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  24091869 tccaatgtatatgaaagattctcataaagagttacaactcttggttctaaagtgattctattattttggaaatcac 24091794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 2024354 - 2024411
Alignment:
Q  23 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  2024354 taaataataatgttccaatgtatatgaatggttcccgtgaagagttacaactcttggt 2024411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 43540620 - 43540563
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  43540620 tgaagagttacaacttttggttctaaattgattcaattattttggaaatcaccaacaa 43540563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 2024420 - 2024468
Alignment:
Q  69 acaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2024420 acaacttttggttctaaagtgattccattattttggaaatcaccaacaa 2024468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 4555967 - 4556019
Alignment:
Q  65 agttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  4555967 agttacaacttttaattctaaagtgattccattattttggaaatcaccaacaa 4556019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 35368680 - 35368623
Alignment:
Q  59 atgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||| |||||||||||||| |||||||||||||||||| |||| ||||| |||||||    
T  35368680 atgaaaagttacaacttttgattctaaagtgattccattcttttagaaattaccaaca 35368623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 43540666 - 43540620
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||  || |||||||||||||||||| |||||    
T  43540666 gttccaatgtatatgaataattaccatgaagagttacaactcttggt 43540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 43401947 - 43401906
Alignment:
Q  43 tatatgaatggttcccatgaagagttacaacttttggttcta 84  Q
    |||||||||| || |||||| |||||||||||||||||||||    
T  43401947 tatatgaatgatttccatgatgagttacaacttttggttcta 43401906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 35091203 - 35091319
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35091203 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 35091302  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  35091303 ttggaaatcaccaacaa 35091319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 35096316 - 35096431
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  35096316 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaactttttgttctaaagtgattccattatt 35096415  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  35096416 ttggaaatcaccaaca 35096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 32429150 - 32429034
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattat 99  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||    
T  32429150 tgtcatggttcattatctatcaataaataataatgttccaatgtatatgaatgatttccatgaagagttacaactcttggttctaaagtgattccattat 32429051  T
Q  100 tttggaaatcaccaaca 116  Q
    |||||||||||||||||    
T  32429050 tttggaaatcaccaaca 32429034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 3424229 - 3424113
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattat 99  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3424229 tgtcatggttcattatctatcaataaataataatgttccaatgtatatga-tggttctcatgaagagttacaacttttggttctaaagtgattccattat 3424131  T
Q  100 tttggaaatcaccaacaa 117  Q
    |||||||||||| |||||    
T  3424130 tttggaaatcacaaacaa 3424113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 34279331 - 34279253
Alignment:
Q  39 aatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34279331 aatgtatatgaatgattcccatgaagaattgaaacttttggttctaaagtgattccattattttggaaatcaccaacaa 34279253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 47071758 - 47071821
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaaaaaata 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47071758 tgaagagttacaacttttggttgtaaagtgattccattattttggaaatcaccaacaaaaaata 47071821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 22119073 - 22119131
Alignment:
Q  59 atgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22119073 atgaagagttacaacttttggttctaaagtgattccattattttgaaaatcaccaacaa 22119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 54859060 - 54858987
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaa 107  Q
    ||||||||||||||||||| |||| |||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  54859060 gttccaatgtatatgaatgattccaatgaagagttacaatttttggttgtaaagtgattctattattttggaaa 54858987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3409465 - 3409393
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaa 72  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3409465 tgtcatggttcattatctatcaataaataataatgttccaatgtatatgaatggttctcatgaagagttacaa 3409393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18716827 - 18716907
Alignment:
Q  1 tgtcatggttcattattaataa-taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||  || | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18716827 tgtcatggttcattatctatcactaaataataatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggt 18716907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18737500 - 18737580
Alignment:
Q  1 tgtcatggttcattattaataa-taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||  || | ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  18737500 tgtcatggttcattatctatcactaaataataatgtaccaatgtatatgaatggttcccatgaagagttacaactcttggt 18737580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 18671177 - 18671242
Alignment:
Q  1 tgtcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaaga 65  Q
    ||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||    
T  18671177 tgtcatggttcattatttatcaataaataataatgtaccaatgtatatgaatggttcccatgaaga 18671242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 14643582 - 14643526
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  14643582 tgaagagttacaacttttggttctaaagtgattcaattattttgtaaatcaccaaca 14643526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 3409376 - 3409329
Alignment:
Q  69 acaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3409376 acaacttttagttctaaagtgattccattattttggaaatcaccaaca 3409329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 25618108 - 25618050
Alignment:
Q  58 catgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||| |||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  25618108 catgaacagttacaactcttagttctaaagtgattccaatattttggaaatcaccaaca 25618050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 34128205 - 34128120
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccatta-ttttggaaatcaccaacaaa 118  Q
    |||||||| |||||||| | ||| ||   |||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  34128205 gttccaatatatatgaaagattctcacagagagttacaacttttggttctaaaatgattccataatttttggaaatcaccaacaaa 34128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 34601881 - 34601825
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  34601881 tgaaaagttacaacttttagttctaaaatgattccattattttagaaatcaccaaca 34601825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 18737586 - 18737634
Alignment:
Q  63 agagttacaacttttggttctaaagtgattccattattttggaaatcacc 112  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18737586 agagttacaa-ttttggttctaaactgattccattattttggaaatcacc 18737634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 30019692 - 30019638
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||    
T  30019692 tgaagagttacaactt--gattctaaagtgattccattattttagaaatcaccaaca 30019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 14643628 - 14643582
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
T  14643628 gttccaatgtatatgaatgattcccatgaatagttacaactcttggt 14643582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 18716920 - 18716958
Alignment:
Q  74 ttttggttctaaagtgattccattattttggaaatcacc 112  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  18716920 ttttggttctaaactgattccattattttggaaatcacc 18716958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 30019738 - 30019692
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||    
T  30019738 gttccaatgtatatgaaagattcccatgaagagttacaactcttggt 30019692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 47071712 - 47071758
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||| ||  ||||||||||||||||| |||||    
T  47071712 gttccaatgtatatgaatgattttcatgaagagttacaactcttggt 47071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 34601922 - 34601886
Alignment:
Q  39 aatgtatatgaatggttcccatgaagagttacaactt 75  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  34601922 aatgtatatgaatgattctcatgaagagttacaactt 34601886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28574585 - 28574701
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574585 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 28574684  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  28574685 ttggaaatcaccaacaa 28574701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 28598597 - 28598713
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28598597 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaattgattccattatt 28598696  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  28598697 ttggaaatcaccaacaa 28598713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 3468356 - 3468471
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||    
T  3468356 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcctatgaagaattacaacttttgattctaaaatgattccattatt 3468455  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  3468456 ttggaaatcaccaaca 3468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 43359091 - 43359205
Alignment:
Q  3 tcatggttcattattaat-aataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattt 101  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  43359091 tcatggttcattatcaatcaataaataataatgttccaatgtatatgaatgattctcatgaagagttacaactcttggttctaaagtgattccattattt 43359190  T
Q  102 tggaaatcaccaaca 116  Q
    |||||||||||||||    
T  43359191 tggaaatcaccaaca 43359205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 16051511 - 16051591
Alignment:
Q  39 aatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaaaa 119  Q
    |||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16051511 aatgtatatgaatgattcccataaagagttataacttttggttctaaagtgattccattattttagaaatcaccaacaaaa 16051591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 3701377 - 3701293
Alignment:
Q  5 atggttcattat-taataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagt 88  Q
    |||||||||||| || || ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||    
T  3701377 atggttcattatctattagtaaataataatgttctaatgtatatgaatggttcctataaagagttacaacttttggttctaaagt 3701293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 17414359 - 17414304
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaac 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17414359 tgaagagttacaagttttggttctaaagtgattccattattttggaaatcaccaac 17414304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 13654676 - 13654730
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13654676 tgaagagttacaacttttggttctaaagtgattccattattttggaaattaccaa 13654730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 35653090 - 35653036
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35653090 tgaagagttacaacttttggttccaaagtgattccattattttggaaatcaccaa 35653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 1188333 - 1188389
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1188333 tgaaaagttacaatttttggttctaaagtgattccattattttggaaatcaccaaca 1188389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 19311180 - 19311230
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatca 110  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19311180 tgaagagttacaacttttggttataaagtgattccattattttggaaatca 19311230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 17414435 - 17414359
Alignment:
Q  5 atggttcattat-taataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    |||||||||||| || || ||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||    
T  17414435 atggttcattatctattagtaaataataatgttctaatgtatatgaatgattctaatgaagagttacaacttttggt 17414359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 10186056 - 10186101
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttgga 105  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  10186056 tgaagagttacaacttttgattctaaagtgattccattattttgga 10186101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 1188178 - 1188221
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttg 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  1188178 tgaaaagttacaacttttggttctaaagtgattccattattttg 1188221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 3696165 - 3696111
Alignment:
Q  62 aagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||    
T  3696165 aagagttacaacttttgattccaaagtgattccattattttagaaattaccaaca 3696111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 10186359 - 10186307
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcacc 112  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||| ||||    
T  10186359 tgaagagttaaaacttttgagtctaaagtgattccattattttggaaagcacc 10186307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 3696224 - 3696169
Alignment:
Q  23 taaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttg 78  Q
    ||||||||||||||  |||||||||||||| |||||||||| |||| |||||||||    
T  3696224 taaataataatgttttaatgtatatgaatgattcccatgaaaagttgcaacttttg 3696169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 19311134 - 19311180
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||||    
T  19311134 gttccaatgtatatgaaagattcccatgaagagttacaactcttggt 19311180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 117
Target Start/End: Complemental strand, 21430833 - 21430776
Alignment:
Q  59 atgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||||||||||||||||| | ||||| |||||| ||||||||| |||||||||||||    
T  21430833 atgaagagttacaacttttgat-ctaaaatgattctattattttgaaaatcaccaacaa 21430776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 1188129 - 1188178
Alignment:
Q  31 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    |||||||||||||||||||| | |||||||||| |||||||||| |||||    
T  1188129 aatgttccaatgtatatgaaagattcccatgaatagttacaactcttggt 1188178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 35626539 - 35626591
Alignment:
Q  63 agagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||| ||||| | ||||||||||||||||||||| |||||||||||||    
T  35626539 agagttacaatttttgat-ctaaagtgattccattattttagaaatcaccaaca 35626591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 44523968 - 44523933
Alignment:
Q  39 aatgtatatgaatggttcccatgaagagttacaact 74  Q
    |||||||||||||| |||||||||||||||||||||    
T  44523968 aatgtatatgaatgattcccatgaagagttacaact 44523933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 10186401 - 10186359
Alignment:
Q  38 caatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||| | ||||||||||||||||||||| |||||    
T  10186401 caatgtatatgaaagattcccatgaagagttacaactcttggt 10186359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 35653134 - 35653090
Alignment:
Q  36 tccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    |||||| |||||||||| ||||||||||| ||||||||| |||||    
T  35653134 tccaatatatatgaatgattcccatgaagtgttacaactcttggt 35653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 14917298 - 14917183
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14917298 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 14917199  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  14917198 ttggaaatcaccaaca 14917183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 17720115 - 17719998
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17720115 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatagttcccatgaagagttacaacttttggttctaaagtgattccattatt 17720016  T
Q  101 ttggaaatcaccaacaaa 118  Q
    ||||||||||||||||||    
T  17720015 ttggaaatcaccaacaaa 17719998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17720442 - 17720326
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17720442 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattctattatt 17720343  T
Q  101 ttggaaatcaccaacaa 117  Q
    |||||||||||||||||    
T  17720342 ttggaaatcaccaacaa 17720326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 39178887 - 39179002
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39178887 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttagttctaaagtgattccattatt 39178986  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  39178987 ttggaaatcaccaaca 39179002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 45120675 - 45120790
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  45120675 tgtcatggttcattattaataataaataataatgtttcaatgtatatgaatggttcccatgaagagttacaacttttaattctaaagtgattccattatt 45120774  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  45120775 ttggaaatcaccaaca 45120790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 30283366 - 30283251
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  30283366 tgtcatggttcagtatcaataataaataataatgttccaatgtacatgaatggttcccatgaagagttacaacttttggttctaaaatgattccattatt 30283267  T
Q  101 ttggaaatcaccaaca 116  Q
    ||||||||||||||||    
T  30283266 ttggaaatcaccaaca 30283251  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 42780542 - 42780597
Alignment:
Q  62 aagagttacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42780542 aagagtaacaacttttggttctaaagtgattccattattttggaaatcaccaacaa 42780597  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 20892203 - 20892154
Alignment:
Q  31 aatgttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  20892203 aatgttccaatgtatatgaatggttctcatgaagagttacaactcttggt 20892154  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 716634 - 716715
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    ||||||||||||||||| | ||| ||| ||||||||||||||||   |||||| |||||||||||||||  |||||| |||||    
T  716634 gttccaatgtatatgaaagattcacataaagagttacaactttt-aatctaaaatgattccattattttaaaaatcatcaaca 716715  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 42780494 - 42780540
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||| | ||| |||||||||||||||||||||||    
T  42780494 gttccaatgtatatgaaagattctcatgaagagttacaacttttggt 42780540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 20892146 - 20892110
Alignment:
Q  68 tacaacttttggttctaaagtgattccattattttgg 104  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20892146 tacaacttttggttttaaagtgattccattattttgg 20892110  T

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Target: scaffold0223 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 1935 - 1816
Alignment:
Q  1 tgtcatggttcattattaataataaataataatgttccaatgtatatgaatggttcccatgaagagttacaacttttggttctaaagtgattccattatt 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1935 tgtcatggttcattattaataataaatagtaatgttccaatgtatatgaatggttcccatgaagagatacaacttttggttctaaagtgattccattatt 1836  T
Q  101 ttggaaatcaccaacaaaaa 120  Q
    ||| ||||||||||||||||    
T  1835 ttgaaaatcaccaacaaaaa 1816  T

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Target: scaffold0006 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 144437 - 144491
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  144437 tgaagagttacaacttttggttctaaagtgattccattattttggaaattaccaa 144491  T

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Target: scaffold0005 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 173710 - 173766
Alignment:
Q  60 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 116  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  173710 tgaagagttacaacttttggttctaaagtgattcaattattttgtaaatcaccaaca 173766  T

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Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 173664 - 173710
Alignment:
Q  34 gttccaatgtatatgaatggttcccatgaagagttacaacttttggt 80  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||    
T  173664 gttccaatgtatatgaatgattcccatgaatagttacaactcttggt 173710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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