View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_63 (Length: 273)
Name: NF5921_low_63
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_63 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 49104764 - 49105021
Alignment:
| Q |
18 |
tcaatcaagtggcgtatatgtcagatacaatccattaacaagaattattattgaattaataatacacttccccaattgttgcgcatttatttacttcgat |
117 |
Q |
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| T |
49104764 |
tcaatcaagtggcgtatatgtcagatacaatccattaacaagaattattattgaattaataatacacttccccaattgttgcgcatttatttacttcgat |
49104863 |
T |
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| Q |
118 |
aaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacggg--nnnnnnnnnnctaatacctgatctataattggaagatat |
215 |
Q |
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| T |
49104864 |
aaaatgtctttttaatgtgggactcataacacaatattcggtgacagtatgaaaacgggaagaaaaaaaaactattacctgatctataattggaagatat |
49104963 |
T |
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| Q |
216 |
ccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactc |
273 |
Q |
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| T |
49104964 |
ccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactc |
49105021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 18133629 - 18133699
Alignment:
| Q |
192 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctc |
262 |
Q |
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| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctc |
18133699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 49120839 - 49120909
Alignment:
| Q |
192 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctc |
262 |
Q |
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| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctc |
49120909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 6955108 - 6955025
Alignment:
| Q |
190 |
atacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactc |
273 |
Q |
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| T |
6955108 |
atacctgttctataattggaagatatccaccaacattaggaagtatggtaccatttgggagaattccaccttcacctcccactc |
6955025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
190 |
atacctgatctataattggaagatatccaccaacatttgggagtatgg |
237 |
Q |
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| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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