View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_64 (Length: 270)

Name: NF5921_low_64
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_64
NF5921_low_64
[»] chr3 (7 HSPs)
chr3 (1-231)||(1719030-1719260)
chr3 (81-137)||(54186977-54187033)
chr3 (43-118)||(1741297-1741372)
chr3 (13-70)||(1741230-1741287)
chr3 (81-137)||(29235724-29235780)
chr3 (81-209)||(13639407-13639535)
chr3 (67-103)||(44790221-44790257)
[»] chr8 (2 HSPs)
chr8 (78-116)||(34172504-34172542)
chr8 (80-130)||(30085425-30085475)
[»] chr1 (3 HSPs)
chr1 (78-116)||(31846904-31846942)
chr1 (81-137)||(19078988-19079044)
chr1 (81-137)||(19126876-19126932)
[»] chr4 (2 HSPs)
chr4 (45-133)||(12678962-12679050)
chr4 (80-137)||(51475211-51475268)
[»] chr2 (3 HSPs)
chr2 (66-118)||(8503869-8503921)
chr2 (81-129)||(6951782-6951830)
chr2 (81-129)||(42635392-42635440)
[»] chr7 (5 HSPs)
chr7 (78-137)||(41873481-41873540)
chr7 (60-130)||(29310449-29310519)
chr7 (80-133)||(23972105-23972158)
chr7 (81-137)||(557425-557481)
chr7 (81-137)||(47822056-47822112)
[»] chr6 (1 HSPs)
chr6 (93-137)||(7447626-7447670)
[»] chr5 (2 HSPs)
chr5 (81-137)||(30892184-30892240)
chr5 (179-211)||(33985257-33985289)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1719030 - 1719260
Alignment:
Q  1 gtaattattaataacttaaacaacaatatttcactataaaagaaatgttagaaccactttctttctaatatttactgttttattggataaaactcatgtg 100  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||  || ||||||||| |||||||||||||    
T  1719030 gtaattattaataacttaaaaaacaatatttcactataagagaaatgttagaaccactttctttctaatattcgctcttttattgggtaaaactcatgtg 1719129  T
Q  101 aatctcaccactttatgtcgaatccatttctaatgtgggagactcgaacgaatcacatcgaatgaaagagtaaatataagagagattgttagaaagaaag 200  Q
    |||||||||||||||||||||||  ||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1719130 aatctcaccactttatgtcgaattgatttctaatgtgttagactcgaacgagtcacatcgaataaaagagtaaatataagagagattgttagaaagaaag 1719229  T
Q  201 tgtgcataacactcttctgcattgtaaagaa 231  Q
    ||||||||| |||| ||| ||  ||||||||    
T  1719230 tgtgcataatactcctcttcacggtaaagaa 1719260  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 54186977 - 54187033
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | ||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  54186977 tattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtg 54187033  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 1741297 - 1741372
Alignment:
Q  43 aaatgttagaaccactttctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgt 118  Q
    ||||||||||| |||| | ||||||||||  ||| ||||||| ||| |||||||||||  ||||||||||||||||    
T  1741297 aaatgttagaaacactctgtttctaatatgcactcttttattagattaaactcatgtgggtctcaccactttatgt 1741372  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 1741230 - 1741287
Alignment:
Q  13 aacttaaacaacaatatttcactataaaagaaatgttagaaccactttctttctaata 70  Q
    |||||||||| |||||||||||||||||| ||| ||||||| || | |||||||||||    
T  1741230 aacttaaacagcaatatttcactataaaaaaaaggttagaaacattctctttctaata 1741287  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 29235780 - 29235724
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||||||| ||| |||||||||||||||| | ||||||||||||||||    
T  29235780 tattgggtgaaactcatatgagtctcaccactttatgttggatccatttctaatgtg 29235724  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 209
Target Start/End: Complemental strand, 13639535 - 13639407
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtgggagactcgaacgaatcacatcgaatgaaagagtaaatataag 180  Q
    |||||| | |||||||||||  ||||||||||||||||   ||||||||| |||||| || || |  | ||||  |||| ||| ||||||| | | | ||    
T  13639535 tattgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttcatccaataaaagagtgactgttag 13639436  T
Q  181 agagattgttagaaagaaagtgtgcataa 209  Q
    ||||| ||||||||||| ||||| |||||    
T  13639435 agagagtgttagaaagagagtgttcataa 13639407  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 44790221 - 44790257
Alignment:
Q  67 aatatttactgttttattggataaaactcatgtgaat 103  Q
    |||||||| | ||||||||||||||||||||||||||    
T  44790221 aatatttaattttttattggataaaactcatgtgaat 44790257  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 34172504 - 34172542
Alignment:
Q  78 ttttattggataaaactcatgtgaatctcaccactttat 116  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34172504 ttttattggataaaactcatgtgagtctcaccactttat 34172542  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 30085425 - 30085475
Alignment:
Q  80 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttc 130  Q
    ||||||| | ||||||||||| ||||||||||||||||| | |||||||||    
T  30085425 ttattgggtgaaactcatgtggatctcaccactttatgtgggatccatttc 30085475  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 31846904 - 31846942
Alignment:
Q  78 ttttattggataaaactcatgtgaatctcaccactttat 116  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31846904 ttttattggataaaactcatatgaatctcaccactttat 31846942  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 19079044 - 19078988
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||||||||||  |||||||||||||||| | ||||||||| ||||||    
T  19079044 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19078988  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 19126932 - 19126876
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||||||||||  |||||||||||||||| | ||||||||| ||||||    
T  19126932 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtg 19126876  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 12679050 - 12678962
Alignment:
Q  45 atgttagaaccactttctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaa 133  Q
    ||||||| | |||||||||||||| ||| ||| || |||| ||| |||||||| ||| |||||||||||||| |   ||||||||||||    
T  12679050 atgttaggaacactttctttctaacattcactcttatattagatgaaactcatatgagtctcaccactttatatgagatccatttctaa 12678962  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 51475211 - 51475268
Alignment:
Q  80 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    ||||||| | |||| |||||| ||||||||||||||||| | ||||||||| ||||||    
T  51475211 ttattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtg 51475268  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 8503921 - 8503869
Alignment:
Q  66 taatatttactgttttattggataaaactcatgtgaatctcaccactttatgt 118  Q
    ||||||||||| |  |||||||| ||||||||||| |||||||||||||||||    
T  8503921 taatatttactctcctattggatgaaactcatgtggatctcaccactttatgt 8503869  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 6951830 - 6951782
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccattt 129  Q
    |||||||| |||||||||||  |||||||||||||||| | ||||||||    
T  6951830 tattggatgaaactcatgtgggtctcaccactttatgtgggatccattt 6951782  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 42635440 - 42635392
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccattt 129  Q
    |||||||| |||||||||||  ||||| |||||||||| ||||||||||    
T  42635440 tattggatgaaactcatgtgggtctcatcactttatgtggaatccattt 42635392  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 41873481 - 41873540
Alignment:
Q  78 ttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    ||||||||| | |||||||||||| ||||| |||||||||| |  |||||||||||||||    
T  41873481 ttttattgggtgaaactcatgtgagtctcatcactttatgtgggttccatttctaatgtg 41873540  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 29310449 - 29310519
Alignment:
Q  60 tctttctaatatttactgttttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttc 130  Q
    ||||||||| | | ||| ||||||||| | |||||||||||  |||||||||||||||| | |||||||||    
T  29310449 tctttctaacactcacttttttattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttc 29310519  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 23972158 - 23972105
Alignment:
Q  80 ttattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaa 133  Q
    ||||||||| ||||||||||| |||||| |||||||||| |||  |||||||||    
T  23972158 ttattggatgaaactcatgtgtatctcatcactttatgtggaacacatttctaa 23972105  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 557425 - 557481
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||||||||||  |||||||||||||||| | |||||||| |||||||    
T  557425 tattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtg 557481  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 47822112 - 47822056
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||| |||||| ||||||||||||||||| | ||||||||| ||||||    
T  47822112 tattgggtgaaacccatgtggatctcaccactttatgtgggatccatttccaatgtg 47822056  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 7447626 - 7447670
Alignment:
Q  93 ctcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    ||||||||  |||||||||||||||| | ||||||||||||||||    
T  7447626 ctcatgtgggtctcaccactttatgtgggatccatttctaatgtg 7447670  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 30892240 - 30892184
Alignment:
Q  81 tattggataaaactcatgtgaatctcaccactttatgtcgaatccatttctaatgtg 137  Q
    |||||| | |||||||| ||| |||||||| ||||||| | ||||||||||||||||    
T  30892240 tattgggtgaaactcatatgagtctcaccattttatgtgggatccatttctaatgtg 30892184  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 211
Target Start/End: Original strand, 33985257 - 33985289
Alignment:
Q  179 agagagattgttagaaagaaagtgtgcataaca 211  Q
    ||||||||| |||||||||||||||||||||||    
T  33985257 agagagatttttagaaagaaagtgtgcataaca 33985289  T

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