View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_65 (Length: 268)
Name: NF5921_low_65
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 23017993 - 23018230
Alignment:
| Q |
1 |
taattttccgttaaaactagacttagtcaggatgatgaagagtcactaaacaaataaggatacataaattagttttgcaatttcgaaatgcaaattatca |
100 |
Q |
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| T |
23017993 |
taattttccgttaaaactagacttagtcaggatgatgaagagtcactaaacaaataaggatacataaattagttttgcaatttcgaaatgcaaattatca |
23018092 |
T |
|
| Q |
101 |
ccttgaacaagtaacaaagacagttccagggcggagagattgagtaaccaacgatgacagtgatgaaatgcgacggcgactctaactgtctcgaaccaga |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23018093 |
ccttgaacaagtaacaaagacagttcgagggcggagagattgagtaaccaacgatgacagtgatgaaatgcgacggcgactctaactgtctcgaaccaga |
23018192 |
T |
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| Q |
201 |
gaaggcgatgagggagagtgaggga--gtatttccctt |
236 |
Q |
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||||||||||||||||||||||||| ||||||||||| |
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| T |
23018193 |
gaaggcgatgagggagagtgagggaacgtatttccctt |
23018230 |
T |
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