View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_68 (Length: 263)

Name: NF5921_low_68
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_68
NF5921_low_68
[»] chr2 (5 HSPs)
chr2 (1-243)||(1615668-1615910)
chr2 (164-243)||(24454640-24454720)
chr2 (195-243)||(12741814-12741862)
chr2 (195-243)||(23348927-23348975)
chr2 (195-243)||(18355260-18355308)
[»] chr8 (4 HSPs)
chr8 (164-243)||(27541475-27541554)
chr8 (195-243)||(5657897-5657945)
chr8 (195-243)||(31100819-31100867)
chr8 (195-243)||(14677968-14678016)
[»] scaffold0035 (1 HSPs)
scaffold0035 (195-243)||(35189-35237)
[»] chr7 (4 HSPs)
chr7 (195-243)||(1262214-1262262)
chr7 (195-243)||(26909928-26909976)
chr7 (195-243)||(48849754-48849802)
chr7 (195-243)||(43071329-43071377)
[»] chr6 (2 HSPs)
chr6 (195-243)||(33045378-33045426)
chr6 (190-226)||(10092641-10092677)
[»] chr5 (4 HSPs)
chr5 (195-243)||(22009475-22009523)
chr5 (195-243)||(7473436-7473484)
chr5 (195-243)||(30442494-30442542)
chr5 (195-243)||(9043928-9043976)
[»] chr3 (5 HSPs)
chr3 (195-243)||(31685203-31685251)
chr3 (195-243)||(19882058-19882106)
chr3 (195-243)||(53973233-53973281)
chr3 (195-243)||(37982475-37982523)
chr3 (192-243)||(17681892-17681944)
[»] scaffold0596 (1 HSPs)
scaffold0596 (195-243)||(780-828)
[»] scaffold0045 (1 HSPs)
scaffold0045 (195-243)||(11581-11629)
[»] chr4 (1 HSPs)
chr4 (199-243)||(29863312-29863356)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1615668 - 1615910
Alignment:
Q  1 gataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaattagtagaataaaagccgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1615668 gataattcaatacaaacaaccaacataaatataatttaaaaataatttttctgaactatagaacttgcagaccagagcaaatagtagaataaaagccgct 1615767  T
Q  101 aagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtatagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615768 aagctgcaactggattaagtggagacgaatcaaaacccaagaaaaaaccatttaggtgtatatttacactataagctatattggaatttggtgtatagga 1615867  T
Q  201 aatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1615868 aatatacatcaaatttgaaagtttgactcaaattagatcaaag 1615910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 24454720 - 24454640
Alignment:
Q  164 ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttg-actcaaattagatcaaag 243  Q
    |||||||||||||||||| |||||| |||| |||||||| | |||||||||||||||||||| | ||| ||||||||||||    
T  24454720 ttacactataagctatatgggaattcggtgcataggaaaaagacatcaaatttgaaagtttgaagtcagattagatcaaag 24454640  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 12741862 - 12741814
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12741862 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 12741814  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 23348927 - 23348975
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  23348927 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 23348975  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 18355260 - 18355308
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  18355260 ataggaaatatacatcaaatttgaaaatttgactcagattagattaaag 18355308  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 27541475 - 27541554
Alignment:
Q  164 ttacactataagctatattggaatttggtgtataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27541475 ttacactataagctatatgggaatttggtgcataggaaatatacatcaaatttgaaagtttgattcagattagatcaaag 27541554  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 5657945 - 5657897
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5657945 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 5657897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 31100819 - 31100867
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31100819 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 31100867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 14677968 - 14678016
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  14677968 ataggaaatatacattaaatttgaaagtttgactcagattagatcaaag 14678016  T

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Target: scaffold0035 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 35237 - 35189
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35237 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 35189  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 1262262 - 1262214
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1262262 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 1262214  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 26909928 - 26909976
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26909928 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 26909976  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 48849754 - 48849802
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48849754 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 48849802  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 43071329 - 43071377
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  43071329 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 43071377  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 33045378 - 33045426
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33045378 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 33045426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 10092677 - 10092641
Alignment:
Q  190 ggtgtataggaaatatacatcaaatttgaaagtttga 226  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10092677 ggtgcataggaaatatacatcaaatttgaaagtttga 10092641  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 22009475 - 22009523
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22009475 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 22009523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 7473436 - 7473484
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  7473436 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 7473484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 30442494 - 30442542
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  30442494 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 30442542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 9043976 - 9043928
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  9043976 ataggaaatatacatcaaatttaaaaatttgactcagattagatcaaag 9043928  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 31685251 - 31685203
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31685251 ataggaaatatacatcaaatttgaaagtttgactcagattagatcaaag 31685203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 19882058 - 19882106
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  19882058 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 19882106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 53973233 - 53973281
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  53973233 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 53973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 37982523 - 37982475
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||    
T  37982523 ataggaaatatacatcaaatttgaaaatttgactcagattagattaaag 37982475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 17681944 - 17681892
Alignment:
Q  192 tgtataggaaatatacatcaaatttgaaagtttgactcaa-attagatcaaag 243  Q
    ||||| |||||||||||| |||||| ||| |||||||||| ||||||||||||    
T  17681944 tgtatgggaaatatacattaaatttaaaaatttgactcaagattagatcaaag 17681892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 828 - 780
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  828 ataggaaatatacatcaaatttgaaaatttgactcagattagatcaaag 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 11581 - 11629
Alignment:
Q  195 ataggaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||    
T  11581 ataggaaatatacatcaaatttgaaagtttgactcagattaaatcaaag 11629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 29863312 - 29863356
Alignment:
Q  199 gaaatatacatcaaatttgaaagtttgactcaaattagatcaaag 243  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  29863312 gaaatatacatcaaatttgaaagtttgactcagattagatcaaag 29863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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