View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_7 (Length: 669)

Name: NF5921_low_7
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_7
NF5921_low_7
[»] chr7 (13 HSPs)
chr7 (17-519)||(4160867-4161369)
chr7 (17-379)||(4170599-4170961)
chr7 (74-370)||(4176443-4176739)
chr7 (572-660)||(4161368-4161460)
chr7 (439-488)||(48771939-48771988)
chr7 (439-548)||(24513798-24513909)
chr7 (439-474)||(30579336-30579371)
chr7 (439-501)||(33869458-33869520)
chr7 (439-517)||(48039644-48039722)
chr7 (520-553)||(20335790-20335823)
chr7 (439-488)||(25590612-25590661)
chr7 (513-557)||(4572252-4572296)
chr7 (439-471)||(41487363-41487395)
[»] chr8 (16 HSPs)
chr8 (441-548)||(11492037-11492146)
chr8 (439-553)||(28783061-28783177)
chr8 (439-548)||(26688866-26688977)
chr8 (440-543)||(3624582-3624686)
chr8 (513-553)||(27979234-27979274)
chr8 (513-553)||(28036503-28036543)
chr8 (439-547)||(19703452-19703562)
chr8 (440-543)||(2203494-2203599)
chr8 (439-501)||(11979253-11979315)
chr8 (439-493)||(34778736-34778790)
chr8 (439-488)||(22268959-22269008)
chr8 (439-488)||(35287717-35287766)
chr8 (516-548)||(11942533-11942565)
chr8 (513-545)||(32167463-32167495)
chr8 (442-474)||(33692342-33692374)
chr8 (439-548)||(33727837-33727948)
[»] chr1 (8 HSPs)
chr1 (439-553)||(40257400-40257516)
chr1 (439-535)||(19528306-19528402)
chr1 (439-543)||(51814495-51814601)
chr1 (439-517)||(15581139-15581216)
chr1 (520-557)||(9879522-9879559)
chr1 (441-543)||(24730387-24730491)
chr1 (442-494)||(17391130-17391182)
chr1 (439-491)||(30043619-30043671)
[»] scaffold0194 (1 HSPs)
scaffold0194 (442-488)||(13072-13118)
[»] chr3 (14 HSPs)
chr3 (439-517)||(5499404-5499482)
chr3 (439-488)||(4222142-4222191)
chr3 (456-491)||(29563918-29563953)
chr3 (439-543)||(31520574-31520680)
chr3 (518-553)||(49452954-49452989)
chr3 (439-477)||(10499146-10499184)
chr3 (439-488)||(42430336-42430384)
chr3 (439-488)||(46518629-46518678)
chr3 (439-488)||(47454643-47454692)
chr3 (439-491)||(3054995-3055047)
chr3 (439-471)||(8051215-8051247)
chr3 (439-471)||(24459991-24460023)
chr3 (439-471)||(24478156-24478188)
chr3 (440-488)||(42799773-42799821)
[»] chr2 (9 HSPs)
chr2 (439-562)||(42602555-42602680)
chr2 (439-488)||(26545841-26545890)
chr2 (439-471)||(37756014-37756046)
chr2 (439-543)||(23052492-23052598)
chr2 (513-548)||(23230569-23230604)
chr2 (441-488)||(30359657-30359704)
chr2 (439-543)||(42327364-42327470)
chr2 (439-553)||(37480076-37480192)
chr2 (439-471)||(29197419-29197451)
[»] scaffold0101 (1 HSPs)
scaffold0101 (445-547)||(43297-43401)
[»] chr6 (4 HSPs)
chr6 (439-553)||(24641149-24641265)
chr6 (439-548)||(12253708-12253818)
chr6 (442-491)||(3869700-3869749)
chr6 (439-548)||(12234471-12234582)
[»] chr5 (7 HSPs)
chr5 (439-488)||(30109334-30109383)
chr5 (439-539)||(30883171-30883273)
chr5 (439-517)||(16457811-16457889)
chr5 (439-488)||(19373240-19373289)
chr5 (439-550)||(87386-87498)
chr5 (439-471)||(21589289-21589321)
chr5 (449-543)||(43442207-43442303)
[»] chr4 (9 HSPs)
chr4 (439-488)||(9241051-9241100)
chr4 (439-488)||(51250548-51250597)
chr4 (518-548)||(9669420-9669450)
chr4 (439-488)||(17618282-17618331)
chr4 (439-488)||(29195096-29195145)
chr4 (439-488)||(32003090-32003139)
chr4 (439-471)||(19238620-19238652)
chr4 (439-487)||(27965537-27965585)
chr4 (439-471)||(55427243-55427275)
[»] scaffold0221 (1 HSPs)
scaffold0221 (439-486)||(2937-2984)
[»] scaffold0118 (1 HSPs)
scaffold0118 (439-477)||(41670-41708)


Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Original strand, 4160867 - 4161369
Alignment:
Q  17 agttattaaggaaatttatagtttttcctctattgctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagatactaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4160867 agttattaaggaaatttatagtttttcctctattgctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagatactaaa 4160966  T
Q  117 gaaatgtaaagaagctgttacaagtgatggaaaaagaggaaaagtgattgtgatagatatggtaataaatgaaaagaaagacgagaaccaacttactcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4160967 gaaatgtaaagaagctgttacaagtgatggaaaaagaggaaaagtgattgtgatagatatggtaataaatgaaaagaaagatgagaaccaacttactcaa 4161066  T
Q  217 ataaagctactcatgaatgttacaatttcatgtgttaatggaaaagagagaaatgaggaagaatggaaaaagctctttatagaagcaggcttccaagatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4161067 ataaagctactcatgaatgttacaatttcatgtgttaatggaaaagagagaaatgaggaagaatggaaaaagctctttatagaagcaggcttccaagatt 4161166  T
Q  317 acaaaatatctccctttactggattaatgtctcttatagagatctatccttaaaatactaatggtttaattcatttagtagtttacatgctgttataaca 416  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4161167 acaaaatatctccttttactggattaatgtctcttatagagatctatccttaaaatactaatggtttaatccatttagtagtttacatgctgttataaca 4161266  T
Q  417 aaataaatttataataagcactacccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc 516  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||||||||||| |||||||||||||||| ||||||||| ||  |||||| ||||||    
T  4161267 aaataaatttataataagcacaacccatttgggttggtctggtggtattggcttgggatcttgaagtgtgctccttttgaagatcttaggttcgattctc 4161366  T
Q  517 cag 519  Q
    |||    
T  4161367 cag 4161369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 17 - 379
Target Start/End: Complemental strand, 4170961 - 4170599
Alignment:
Q  17 agttattaaggaaatttatagtttttcctctattgctttcttttcctttgcaggcggttttgcatgattggactgataaggattgcataaagatactaaa 116  Q
    |||||||| ||||||||||| | |||| ||| ||||||| | || ||||||||  | |||| ||||||||||| |||| |||||||||||||||| | ||    
T  4170961 agttattagggaaatttataatatttcttctcttgctttttgttactttgcagtggattttacatgattggacggatagggattgcataaagatattgaa 4170862  T
Q  117 gaaatgtaaagaagctgttacaagtgatggaaaaagaggaaaagtgattgtgatagatatggtaataaatgaaaagaaagacgagaaccaacttactcaa 216  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  4170861 gaaatgtaaagaagctgttacaactgaggggaaaagaggaaaagtgattgtgatagacatggtaataaatgaaaagaaagaagagaacgaacttactcaa 4170762  T
Q  217 ataaagctactcatgaatgttacaatttcatgtgttaatggaaaagagagaaatgaggaagaatggaaaaagctctttatagaagcaggcttccaagatt 316  Q
    |||||||| || |||||||| |||||||||||| | |||||||||||||||||||||||||||||||| || ||||| || |||||||||||  || | |    
T  4170761 ataaagctcctaatgaatgtaacaatttcatgtctaaatggaaaagagagaaatgaggaagaatggaagaaactcttcatggaagcaggctttgaaaact 4170662  T
Q  317 acaaaatatctccctttactggattaatgtctcttatagagatctatccttaaaatactaatg 379  Q
    ||||||||||||| | |||||||||| |||||||||| ||||||||||||||||| |||||||    
T  4170661 acaaaatatctccttgtactggattattgtctcttattgagatctatccttaaaacactaatg 4170599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 74 - 370
Target Start/End: Complemental strand, 4176739 - 4176443
Alignment:
Q  74 ttttgcatgattggactgataaggattgcataaagatactaaagaaatgtaaagaagctgttacaagtgatggaaaaagaggaaaagtgattgtgataga 173  Q
    |||| ||| ||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| |||||| |||| ||| || |||||| | |||||    
T  4176739 ttttacataattggactgataaggattgcacaaggatactgaagaaatgtaaagaagctgttacaaatgatgggaaaaaagggaaggtgattattataga 4176640  T
Q  174 tatggtaataaatgaaaagaaagacgagaaccaacttactcaaataaagctactcatgaatgttacaatttcatgtgttaatggaaaagagagaaatgag 273  Q
    |||||| ||||||||||||||||| ||||| ||| |||||||||| ||||| || ||| |||| |  ||  | ||| |||||||||||||||||||||||    
T  4176639 tatggtcataaatgaaaagaaagatgagaatcaagttactcaaattaagctccttatggatgtaaacatggcttgtcttaatggaaaagagagaaatgag 4176540  T
Q  274 gaagaatggaaaaagctctttatagaagcaggcttccaagattacaaaatatctccctttactggattaatgtctcttatagagatctatccttaaa 370  Q
    ||||||||||| || ||||| |||||||| || |||||||| || || |||||||| || ||||||||  |||||||||| ||||||||||| ||||    
T  4176539 gaagaatggaagaaactcttcatagaagctggtttccaagactataagatatctcctttgactggatttttgtctcttattgagatctatccataaa 4176443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 572 - 660
Target Start/End: Original strand, 4161368 - 4161460
Alignment:
Q  572 agcacttgatagatgttgtgaacttaa----gtcacctgtcttatgataatttggggaagaaagacactgaccttgacttgagtgatattctt 660  Q
    |||||||||| ||||||||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  4161368 agcacttgattgatgttgtgaacttaataaagtcacatgtcttatgataatttggggaagaaagacactgaccttgacttgtgtgattttctt 4161460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 48771939 - 48771988
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  48771939 acccacttgggttggcttggtggtattggcttgggatctgggagtgtgct 48771988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 548
Target Start/End: Original strand, 24513798 - 24513909
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc-cag-tgtcaatttggatgggc 536  Q
    |||||||||||||||| | |||||||||||||||||| | | ||||| |||||  |  |||||  |||||| ||| || | | ||||||||||| |||||    
T  24513798 acccacttgggttggcctagtggtattggcttgagatttgggagtgtacttctccttgaggtctcaggttcgattttcactgatgtcaatttgggtgggc 24513897  T
Q  537 taatttaacttc 548  Q
    ||||||||||||    
T  24513898 taatttaacttc 24513909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 474
Target Start/End: Original strand, 30579336 - 30579371
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgaga 474  Q
    |||||||||||||||| |||||||||||||||||||    
T  30579336 acccacttgggttggcctggtggtattggcttgaga 30579371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 501
Target Start/End: Complemental strand, 33869520 - 33869458
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtc 501  Q
    |||||||||||||||| | || |||||||||||||| || |||||||||| ||| | ||||||    
T  33869520 acccacttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtc 33869458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 517
Target Start/End: Complemental strand, 48039722 - 48039644
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc 517  Q
    |||||||||||||||| ||||||| |||||||| ||||||| ||| |||| |||   ||||||  |||||| |||||||    
T  48039722 acccacttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttctattctcc 48039644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 20335823 - 20335790
Alignment:
Q  520 tgtcaatttggatgggctaatttaacttcatcaa 553  Q
    ||||||||||||||||||||||||||||| ||||    
T  20335823 tgtcaatttggatgggctaatttaacttcttcaa 20335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 25590612 - 25590661
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||| | || ||||||||||||||||||| | ||||||||    
T  25590612 acccacttgggttgacctgttggtattggcttgagatctgggagtgtgct 25590661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 557
Target Start/End: Complemental strand, 4572296 - 4572252
Alignment:
Q  513 tctccagtgtcaatttggatgggctaatttaacttcatcaacaaa 557  Q
    ||||| |||||||||||| |||||||||||| |||| ||||||||    
T  4572296 tctccggtgtcaatttgggtgggctaatttatcttcttcaacaaa 4572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 41487363 - 41487395
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  41487363 acccacttgggttggcctggtggtattggcttg 41487395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 548
Target Start/End: Complemental strand, 11492146 - 11492037
Alignment:
Q  441 ccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggcta 538  Q
    |||||||||||||| ||  |||||||||||||||||| | |||||||| ||| |  |||||  |||||| ||||||  |||||||||||||| |||||||    
T  11492146 ccacttgggttggcatgtcggtattggcttgagatctgggagtgtgctccttctcgaggtcttaggttcgattctcttcagtgtcaatttgggtgggcta 11492047  T
Q  539 atttaacttc 548  Q
    ||||| ||||    
T  11492046 atttagcttc 11492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 553
Target Start/End: Original strand, 28783061 - 28783177
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggc 536  Q
    |||||||||||||||||||||||||||||||||||| || | |||||||| ||  | ||||||  | |||| ||||||  | ||| |||||||| |||||    
T  28783061 acccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggc 28783160  T
Q  537 taatttaacttcatcaa 553  Q
    ||||||| |||| ||||    
T  28783161 taatttagcttcttcaa 28783177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 548
Target Start/End: Original strand, 26688866 - 26688977
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattct--ccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| ||||||| |||||||| || |||| |||||||| ||  | ||||||  ||||||| ||||  | ||||||||||||| |||||    
T  26688866 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttcagttcttcctagtgtcaatttgggtgggc 26688965  T
Q  537 taatttaacttc 548  Q
    || |||| ||||    
T  26688966 tagtttagcttc 26688977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 543
Target Start/End: Original strand, 3624582 - 3624686
Alignment:
Q  440 cccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc-cagtgtcaatttggatgggcta 538  Q
    ||||||||||||||| | |||||||||||||| || || | |||||||| || || ||||||  |||||| |||||| | | |||||||| | |||||||    
T  3624582 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctccgggtcaatttaggtgggcta 3624681  T
Q  539 attta 543  Q
    |||||    
T  3624682 attta 3624686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 27979234 - 27979274
Alignment:
Q  513 tctccagtgtcaatttggatgggctaatttaacttcatcaa 553  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  27979234 tctctagtgtcaatttggatgggctaatttaacttcttcaa 27979274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 28036503 - 28036543
Alignment:
Q  513 tctccagtgtcaatttggatgggctaatttaacttcatcaa 553  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  28036503 tctctagtgtcaatttggatgggctaatttaacttcttcaa 28036543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 547
Target Start/End: Complemental strand, 19703562 - 19703452
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc--agtgtcaatttggatgggc 536  Q
    |||||||||||||||| | |||||||||||||| || ||   |||||||| ||  | ||||||  |||||| |||||||  ||||||||||  | |||||    
T  19703562 acccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccctagtgtcaattaaggtgggc 19703463  T
Q  537 taatttaactt 547  Q
    |||||||||||    
T  19703462 taatttaactt 19703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 440 - 543
Target Start/End: Original strand, 2203494 - 2203599
Alignment:
Q  440 cccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattct--ccagtgtcaatttggatgggct 537  Q
    ||||||||||||||| | |||||||||||||| || || | |||||||| ||  | ||||||  ||| ||||||||  || ||| |||||||| ||||||    
T  2203494 cccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggct 2203593  T
Q  538 aattta 543  Q
    ||||||    
T  2203594 aattta 2203599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 501
Target Start/End: Original strand, 11979253 - 11979315
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtc 501  Q
    ||||||||||||||| |||| ||| ||| |||| || ||||||||||||||||| | ||||||    
T  11979253 acccacttgggttggtttggcggtgttgacttgggaccttgaagtgtgcttcttctcaaggtc 11979315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 493
Target Start/End: Original strand, 34778736 - 34778790
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttt 493  Q
    ||||||||||||| || ||||||| ||||||||||| |||| |||||||| ||||    
T  34778736 acccacttgggtttgcctggtggtgttggcttgagaccttgcagtgtgctccttt 34778790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 22269008 - 22268959
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||| ||||||| |||||||| || |||| ||||||||    
T  22269008 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 22268959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 35287717 - 35287766
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||| ||| ||||||| |||||||||||| ||| ||||||||    
T  35287717 acccacttgggtaggcctggtggtgttggcttgagattttggagtgtgct 35287766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 516 - 548
Target Start/End: Original strand, 11942533 - 11942565
Alignment:
Q  516 ccagtgtcaatttggatgggctaatttaacttc 548  Q
    |||||||||||||||||||| ||||||||||||    
T  11942533 ccagtgtcaatttggatgggttaatttaacttc 11942565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 545
Target Start/End: Original strand, 32167463 - 32167495
Alignment:
Q  513 tctccagtgtcaatttggatgggctaatttaac 545  Q
    ||||| |||||||||||||||||||||||||||    
T  32167463 tctccggtgtcaatttggatgggctaatttaac 32167495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 474
Target Start/End: Complemental strand, 33692374 - 33692342
Alignment:
Q  442 cacttgggttggcttggtggtattggcttgaga 474  Q
    |||||||||||| ||||||||||||||||||||    
T  33692374 cacttgggttggtttggtggtattggcttgaga 33692342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 548
Target Start/End: Complemental strand, 33727948 - 33727837
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattc--tccagtgtcaatttggatgggc 536  Q
    ||||| |||||||| | | ||||||| || ||||||  | |||||||||| ||  | ||||||  |||||| ||||  || |||||||||||||||||||    
T  33727948 acccatttgggttgccctagtggtataggtttgagacttggaagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggc 33727849  T
Q  537 taatttaacttc 548  Q
    ||||||| ||||    
T  33727848 taatttagcttc 33727837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 439 - 553
Target Start/End: Original strand, 40257400 - 40257516
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattc--tccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| ||||||||||||||||||| || | |||||||| ||  |  |||||  | |||||||||  ||| |||||||||||| |||||    
T  40257400 acccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggc 40257499  T
Q  537 taatttaacttcatcaa 553  Q
    || |||| |||| ||||    
T  40257500 tagtttagcttcttcaa 40257516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 439 - 535
Target Start/End: Complemental strand, 19528402 - 19528306
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctccagtgtcaatttggatggg 535  Q
    |||||||||||||||| |||||||||||||||| |||||   |||||||| ||  | ||||||  |||||| |||||||   |||||||||||||||    
T  19528402 acccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctccccggtcaatttggatggg 19528306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 543
Target Start/End: Original strand, 51814495 - 51814601
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaat--tctccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| || |||||||| ||||||||||   |||||||| ||  | ||||||  |||||| ||  ||||| ||| |||||||| |||||    
T  51814495 acccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggc 51814594  T
Q  537 taattta 543  Q
    |||||||    
T  51814595 taattta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 517
Target Start/End: Complemental strand, 15581216 - 15581139
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc 517  Q
    |||||||||||||||| ||||||| |||||||| || |||| ||||||| || | | ||||||  ||||||||||||||    
T  15581216 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgc-tcctctaaaggtctcaggttcaattctcc 15581139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 9879522 - 9879559
Alignment:
Q  520 tgtcaatttggatgggctaatttaacttcatcaacaaa 557  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  9879522 tgtcaatttgggtgggctaatttaacttcttcaacaaa 9879559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 543
Target Start/End: Original strand, 24730387 - 24730491
Alignment:
Q  441 ccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggcta 538  Q
    |||||||||||||| | ||||||||| |||||||||| | |||||||| || || ||||||  |||||  || |||  | ||| |||||||| |||||||    
T  24730387 ccacttgggttggcctagtggtattgtcttgagatctgggagtgtgctcctcttcaaggtcccaggtttgatcctcctcggtgccaatttgggtgggcta 24730486  T
Q  539 attta 543  Q
    |||||    
T  24730487 attta 24730491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 494
Target Start/End: Complemental strand, 17391182 - 17391130
Alignment:
Q  442 cacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttctttt 494  Q
    |||||||||||| || ||||| ||| |||||||||||||| |||||| |||||    
T  17391182 cacttgggttggttttgtggtgttgacttgagatcttgaaatgtgctcctttt 17391130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 491
Target Start/End: Complemental strand, 30043671 - 30043619
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttct 491  Q
    |||||| ||||||| ||||||||| | ||||||||| |||| |||||||||||    
T  30043671 acccacatgggttgacttggtggtgtaggcttgagaccttggagtgtgcttct 30043619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 488
Target Start/End: Complemental strand, 13118 - 13072
Alignment:
Q  442 cacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||| |||||||||||||||||||||||||||||| | ||||||||    
T  13118 cacttcggttggcttggtggtattggcttgagatctgggagtgtgct 13072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 517
Target Start/End: Complemental strand, 5499482 - 5499404
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc 517  Q
    |||||||||||||||| ||||||||||| ||||||||||   |||||||| ||  | |||||| ||||||| |||||||    
T  5499482 acccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctcc 5499404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 4222142 - 4222191
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||||| |||||||||||||| ||||| | ||||||||    
T  4222142 acccacttgggttggcttagtggtattggcttgggatctgggagtgtgct 4222191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 491
Target Start/End: Original strand, 29563918 - 29563953
Alignment:
Q  456 tggtggtattggcttgagatcttgaagtgtgcttct 491  Q
    |||||||||||||||||||||| |||||||||||||    
T  29563918 tggtggtattggcttgagatctggaagtgtgcttct 29563953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 543
Target Start/End: Complemental strand, 31520680 - 31520574
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaat--tctccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| |||||| ||||||||| ||||| | |||||||| ||  |  |||||  |||||  ||  |||||||||||||||||  |||||    
T  31520680 acccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctctccagtgtcaatttgagtgggc 31520581  T
Q  537 taattta 543  Q
    |||||||    
T  31520580 taattta 31520574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 553
Target Start/End: Original strand, 49452954 - 49452989
Alignment:
Q  518 agtgtcaatttggatgggctaatttaacttcatcaa 553  Q
    ||||||||||||||||||||||||||||||| ||||    
T  49452954 agtgtcaatttggatgggctaatttaacttcttcaa 49452989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 10499184 - 10499146
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatct 477  Q
    |||||||||||||||| |||||||||||||||| |||||    
T  10499184 acccacttgggttggcctggtggtattggcttgggatct 10499146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 42430336 - 42430384
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||||| |||||||||| |||| ||||||| ||||||||    
T  42430336 acccacttgggttggct-ggtggtattgacttgggatcttggagtgtgct 42430384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 46518629 - 46518678
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||| | |||||||||||||| ||||| | ||||||||    
T  46518629 acccacttgggttggcatagtggtattggcttgggatctgggagtgtgct 46518678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 47454692 - 47454643
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||   | |||||||||||||||||||||| ||||||||    
T  47454692 acccacttgggttgttctagtggtattggcttgagatcttggagtgtgct 47454643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 491
Target Start/End: Original strand, 3054995 - 3055047
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttct 491  Q
    |||||||||||||||| ||||||| |||||||| || |||| || ||||||||    
T  3054995 acccacttgggttggcctggtggtgttggcttgggaccttggagcgtgcttct 3055047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 8051215 - 8051247
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  8051215 acccacttgggttggcctggtggtattggcttg 8051247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 24459991 - 24460023
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  24459991 acccacttgggttggcctggtggtattggcttg 24460023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 24478156 - 24478188
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    ||||||||||||||| |||||||||||||||||    
T  24478156 acccacttgggttggtttggtggtattggcttg 24478188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 488
Target Start/End: Complemental strand, 42799821 - 42799773
Alignment:
Q  440 cccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||| ||||||| |||||||| || |||| ||||||||    
T  42799821 cccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 42799773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 562
Target Start/End: Original strand, 42602555 - 42602680
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaat--tctccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| | |||||||||||||| || || | |||||||| ||| | ||||||  |||||  ||  ||||| ||| |||||||| |||||    
T  42602555 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggc 42602654  T
Q  537 taatttaacttcatcaacaaactaaa 562  Q
    ||||||| |||| |||| ||| ||||    
T  42602655 taatttagcttcttcaaaaaaataaa 42602680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 26545841 - 26545890
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||| ||||||||||| ||||| ||||| ||||||||||    
T  26545841 acccacttgggttggtttggtggtattagcttgggatctggaagtgtgct 26545890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 37756046 - 37756014
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||||||||||||||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttg 37756014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 543
Target Start/End: Complemental strand, 23052598 - 23052492
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc--agtgtcaatttggatgggc 536  Q
    |||||||| ||||||| |||||||||||||||| ||  | | |||||||||||  | ||||||  |||||| |||||||  |||| || ||||| |||||    
T  23052598 acccacttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctccctagtgccagtttgggtgggc 23052499  T
Q  537 taattta 543  Q
    |||||||    
T  23052498 taattta 23052492  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 548
Target Start/End: Complemental strand, 23230604 - 23230569
Alignment:
Q  513 tctccagtgtcaatttggatgggctaatttaacttc 548  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23230604 tctccagtgtcaatttggatgagctaatttaacttc 23230569  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 488
Target Start/End: Original strand, 30359657 - 30359704
Alignment:
Q  441 ccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||||||||| |||||||| || |||| ||||||||    
T  30359657 ccacttgggttggcttggtggtgttggcttgggaccttggagtgtgct 30359704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 543
Target Start/End: Complemental strand, 42327470 - 42327364
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggc 536  Q
    |||||||||||||||| | |||||||||||||| || || | |||||||| ||  | ||||||  |||||| ||||||  | ||| |||||||| |||||    
T  42327470 acccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggc 42327371  T
Q  537 taattta 543  Q
    |||||||    
T  42327370 taattta 42327364  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 553
Target Start/End: Original strand, 37480076 - 37480192
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattct--ccagtgtcaatttggatgggc 536  Q
    |||||||||||||||| |||||||||||||||| || ||   |||||||| ||  | ||||||  |||||| |||||  || ||  |||||||| |||||    
T  37480076 acccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggc 37480175  T
Q  537 taatttaacttcatcaa 553  Q
    ||||||| |||| ||||    
T  37480176 taatttagcttcttcaa 37480192  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 29197451 - 29197419
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||||||||||||||| ||||    
T  29197451 acccacttgggttggcttggtggtattgacttg 29197419  T

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Target: scaffold0101 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 445 - 547
Target Start/End: Complemental strand, 43401 - 43297
Alignment:
Q  445 ttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggctaattt 542  Q
    |||||||||| |||||||||||||||| ||  | | |||||| | ||| | ||||||  | |||| |||| |  ||||||||||||||||||||||||||    
T  43401 ttgggttggcatggtggtattggcttgggacttgggagtgtgttccttcttaaggtctcatgttcgattcccttcagtgtcaatttggatgggctaattt 43302  T
Q  543 aactt 547  Q
    |||||    
T  43301 aactt 43297  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 553
Target Start/End: Complemental strand, 24641265 - 24641149
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc--cagtgtcaatttggatgggc 536  Q
    ||||| |||||||||||||||||||||| |||| ||||| | |||||||| ||  |  ||||  ||||||| ||||||  || || |||||| | |||||    
T  24641265 acccatttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcgattctcctcactgccaatttaggtgggc 24641166  T
Q  537 taatttaacttcatcaa 553  Q
    |||||||||||| ||||    
T  24641165 taatttaacttcttcaa 24641149  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 548
Target Start/End: Original strand, 12253708 - 12253818
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattct-ccagtgtcaatttggatgggct 537  Q
    |||||||||||||| | || |||| |||||||  ||||||| ||  |||| ||  | ||||||  |||||| ||||| |||||||||||||||||| |||    
T  12253708 acccacttgggttgacctgatggtgttggcttaggatcttggagcatgctgctcctcaaggtcttaggttcgattcttccagtgtcaatttggatgagct 12253807  T
Q  538 aatttaacttc 548  Q
    |||||| ||||    
T  12253808 aatttatcttc 12253818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 491
Target Start/End: Original strand, 3869700 - 3869749
Alignment:
Q  442 cacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttct 491  Q
    ||||||||||||| || |||| |||||||||||||||  |||||||||||    
T  3869700 cacttgggttggcctgatggtgttggcttgagatcttcgagtgtgcttct 3869749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 548
Target Start/End: Complemental strand, 12234582 - 12234471
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaat--tctccagtgtcaatttggatgggc 536  Q
    |||||||| ||||||| ||||||||||| |||| || || | |||||||| | | |  |||||  |||||| ||  |||||||||||||||| ||||||     
T  12234582 acccacttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaatttagatggga 12234483  T
Q  537 taatttaacttc 548  Q
    ||||||| ||||    
T  12234482 taatttagcttc 12234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 30109383 - 30109334
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||||||||||||||||||||||||||| || || | ||||||||    
T  30109383 acccacttgggttggcttggtggtattggcttgtgacctgggagtgtgct 30109334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 539
Target Start/End: Complemental strand, 30883273 - 30883171
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattct--ccagtgtcaatttggatgggc 536  Q
    |||||||||||||||  | |||||||||||||| || || | |||||||| ||  | ||||||  | ||||||||||  ||||||||||||||| |||||    
T  30883273 acccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctcaccagtgtcaatttgggtgggc 30883174  T
Q  537 taa 539  Q
    |||    
T  30883173 taa 30883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 517
Target Start/End: Original strand, 16457811 - 16457889
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctcc 517  Q
    |||||||| ||||||| |||||||||||||||| || |||| |||||||| ||  | ||||||  | ||||||||||||    
T  16457811 acccacttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcatgttcaattctcc 16457889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 19373240 - 19373289
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||| |||||| ||||||| ||||||||||| |||| ||||||||    
T  19373240 acccacttgagttggcctggtggtgttggcttgagaccttggagtgtgct 19373289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 550
Target Start/End: Complemental strand, 87498 - 87386
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattc-tccagtgtcaatttggatgggct 537  Q
    |||||||| ||||||| | ||||||||| ||||  |||| | |||||||| ||  | ||||||  |||||  |||| |||||||||||||||  ||||||    
T  87498 acccacttcggttggcctagtggtattgccttggaatctgggagtgtgctcctcctcaaggtctcaggtttgattcctccagtgtcaatttgagtgggct 87399  T
Q  538 aatttaacttcat 550  Q
    |||||| ||||||    
T  87398 aatttagcttcat 87386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 21589289 - 21589321
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  21589289 acccacttgggttggcctggtggtattggcttg 21589321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 449 - 543
Target Start/End: Original strand, 43442207 - 43442303
Alignment:
Q  449 gttggcttggtggtattggcttgagatcttgaagtgtgcttcttttgaaggtcaaaggttcaattctc-cagt-gtcaatttggatgggctaattta 543  Q
    |||||| | |||||||||| ||||||||| | |||||||| ||  | ||||||  |||||| |||||| | || |||||||||||||||||||||||    
T  43442207 gttggcatagtggtattggtttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaattta 43442303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 9241100 - 9241051
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||||||||    
T  9241100 acccacttgggttggcctggtggtattggcttgggatctggtagtgtgct 9241051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 51250597 - 51250548
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||| |||||||||||||||| ||||| | ||||||||    
T  51250597 acccacttgggttggcctggtggtattggcttgggatctgggagtgtgct 51250548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 548
Target Start/End: Original strand, 9669420 - 9669450
Alignment:
Q  518 agtgtcaatttggatgggctaatttaacttc 548  Q
    |||||||||||||||||||||||||||||||    
T  9669420 agtgtcaatttggatgggctaatttaacttc 9669450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 17618282 - 17618331
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||  ||||||||||||||||||||||| || | ||||||||    
T  17618282 acccacttgggccggcttggtggtattggcttgagacctgggagtgtgct 17618331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 29195096 - 29195145
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    |||||||||||||||| ||||||| |||||||| || |||| ||||||||    
T  29195096 acccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct 29195145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 32003090 - 32003139
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgct 488  Q
    ||||||||| |||| |||||||||||||| |||||||||  |||||||||    
T  32003090 acccacttgagttgacttggtggtattggtttgagatctgaaagtgtgct 32003139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 19238652 - 19238620
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  19238652 acccacttgggttggcctggtggtattggcttg 19238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 487
Target Start/End: Complemental strand, 27965585 - 27965537
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtgc 487  Q
    |||||||||||||||| | |||||||||||||| ||||| | |||||||    
T  27965585 acccacttgggttggcctagtggtattggcttgggatctgggagtgtgc 27965537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 471
Target Start/End: Complemental strand, 55427275 - 55427243
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttg 471  Q
    |||||||||||||||| ||||||||||||||||    
T  55427275 acccacttgggttggcctggtggtattggcttg 55427243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 486
Target Start/End: Complemental strand, 2984 - 2937
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatcttgaagtgtg 486  Q
    |||||||||||||||||||||||| |||| ||| || |||||||||||    
T  2984 acccacttgggttggcttggtggttttggtttgggaccttgaagtgtg 2937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 439 - 477
Target Start/End: Complemental strand, 41708 - 41670
Alignment:
Q  439 acccacttgggttggcttggtggtattggcttgagatct 477  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  41708 acccacttgggttggcctagtggtattggcttgagatct 41670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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