View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_71 (Length: 257)
Name: NF5921_low_71
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_71 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 60 - 230
Target Start/End: Complemental strand, 32017600 - 32017430
Alignment:
| Q |
60 |
aaaggaaaagcttaagatattaagtagaaaagataaaataatagtttgttattaacattgtttttatacggaaaattttattacgccaaacctgcacaag |
159 |
Q |
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| T |
32017600 |
aaaggaaaagcttaagatattaagtagaaaagataaaataatagtttgttattaacattgtttttaaacggaaaattttatcacgccaaacctgcacaag |
32017501 |
T |
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| Q |
160 |
aagtgtaaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccctaac |
230 |
Q |
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| T |
32017500 |
aagtgtaaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccctaac |
32017430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5179728 - 5179668
Alignment:
| Q |
166 |
aaaggccagcaaaaacaacaatacaaaaataaatcaggtgttgtatataggcggaacaccc |
226 |
Q |
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| T |
5179728 |
aaaggccagcaaaaacaacagtacaaaatcaaacagggtgccgtatataggcggaacaccc |
5179668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 23353066 - 23352988
Alignment:
| Q |
149 |
acctgcacaagaagtgtaaaggccagcaaaaacaacaatacaaaaa-taaatcaggtgttgtatataggcggaacaccc |
226 |
Q |
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| T |
23353066 |
acctgcacaagaagcgcaaaggccatcaaaaacaacaatagaaaaacaaaatcgggtgccgtatataggcggaacaccc |
23352988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 3595183 - 3595141
Alignment:
| Q |
152 |
tgcacaagaagtgtaaaggccagcaaaaacaacaatacaaaaa |
194 |
Q |
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| T |
3595183 |
tgcacaagaagcgcaaaggccagcaaaaacaacaatataaaaa |
3595141 |
T |
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