View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_73 (Length: 252)
Name: NF5921_low_73
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_73 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 1615360 - 1615609
Alignment:
| Q |
1 |
aaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgt |
100 |
Q |
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| T |
1615360 |
aaatgaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcatcaaagcatcactcttcatcatcttcagcgt |
1615459 |
T |
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| Q |
101 |
atgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataagattgcaacctgcaactacagtgactgtgacatcaagtaaga |
200 |
Q |
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| T |
1615460 |
atgaattcaaacctagccacaccaccatccataaaataagggggaaaaaataacataagattgcaacctgcaaccacagtgactgtgacatc--gtaaga |
1615557 |
T |
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| Q |
201 |
ttttttcccatcaaacagtacttgattttgatactctgcttcatgctatgtt |
252 |
Q |
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| T |
1615558 |
ttttttcccatcaaacaatacttgattttgatactctgcttcatgctatgtt |
1615609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 24455325 - 24455085
Alignment:
| Q |
5 |
gaaatcataacaacaaaaataaatacgtggagggaaaagaaacctgtccaattttcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatga |
104 |
Q |
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| T |
24455325 |
gaaatcataacaacaaaaagaaatatgtggagggaaaagaaacctgtccaaatttcatcttctcataaaagcatcactcttcatcatcttcagcgtatga |
24455226 |
T |
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| Q |
105 |
a-ttcaaacctagccacaccaccatccatacaataagg--gggaaaaaataacataagattgcaacctgcaactacagtgactgtgacatcaagtaagat |
201 |
Q |
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| T |
24455225 |
atttcaaatctagccacaccaccatccataaaatacggaagaaaaaaaaaaacataagattgcaacctgcaaccacag-----------taaagtaagat |
24455137 |
T |
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| Q |
202 |
tttttcccatcaaacagtacttgattttgatact-ctgcttcatgctatgtt |
252 |
Q |
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| T |
24455136 |
tttttcccatcaaacaaaacttgattttgatactcctgcttcatcctatgtt |
24455085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 43227489 - 43227403
Alignment:
| Q |
70 |
tcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataagggggaaaaaataacataa |
158 |
Q |
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| T |
43227489 |
tcaaagcatcactctttgtcatcttcaacgtatgaattcaaacctagccacaccaccatccataaaataa--ggaaaaaaataacataa |
43227403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 48909245 - 48909326
Alignment:
| Q |
59 |
tcatcttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatccatacaataag |
140 |
Q |
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| T |
48909245 |
tcatcttctcatcaaagcctcactctccatcatcttcaacatttgaactcaagcctagcaagaccaccatccataaaataag |
48909326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 35361052 - 35361119
Alignment:
| Q |
63 |
cttctcgtcaaagcatcactcttcatcatcttcagcgtatgaattcaaacctagccacaccaccatcc |
130 |
Q |
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| T |
35361052 |
cttctcatcaaagtctcactcttcatcatcttcaacctatgaactcaaatagagccacaccaccatcc |
35361119 |
T |
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