View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_75 (Length: 249)
Name: NF5921_low_75
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_75 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 30250904 - 30250662
Alignment:
| Q |
7 |
aaattatactgcaaagccaaacattaacatcttggtctctctcttacaccaaagtgacgtatagaatgttaacagaattttaaaagacggccaaacccaa |
106 |
Q |
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| T |
30250904 |
aaattatactgcaaagccaaacattaacatcttggtctctctcttacaccaaagtgacgtatagaatgttaacagaattttaaaagacggccaaacccaa |
30250805 |
T |
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| Q |
107 |
tgtagtacgtgtttacagaacttatcatcaaatgatgttccgacaggctcgttaggagtgtcaaaattaagaggataattacgacgagctagttaaatgg |
206 |
Q |
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| T |
30250804 |
tgtagtacgtgtttacagaacttatcatcaaatgatgttccgacaggctcgttaggagtgtcaaaattaagaggataattacgacgagctagttaaatgg |
30250705 |
T |
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| Q |
207 |
cttttccaattggacacatacacaaaaaatttataccttgcat |
249 |
Q |
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| T |
30250704 |
cttttccaattggacacatacacaaaaaatttataccttgcat |
30250662 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 34327054 - 34326997
Alignment:
| Q |
7 |
aaattatactgcaaagccaaacattaacatcttggtctctctcttacaccaaagtgac |
64 |
Q |
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| T |
34327054 |
aaataatactgcaaagccaaacattgatatcttggtctctctcttacaacaaagtgac |
34326997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 4029153 - 4029100
Alignment:
| Q |
7 |
aaattatactgcaaagccaaacattaacatcttggtctctctcttacaccaaag |
60 |
Q |
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| T |
4029153 |
aaataatactgcaaagccaaacattgatatcttggtctctctcttacatcaaag |
4029100 |
T |
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