View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_78 (Length: 246)
Name: NF5921_low_78
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 12161992 - 12162202
Alignment:
| Q |
17 |
atccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaacacctnnnnnnn |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12161992 |
atccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaacacctaaaaaaa |
12162091 |
T |
|
| Q |
117 |
nnttaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcgtatgcatacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162092 |
aattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcgtatgcatacat |
12162191 |
T |
|
| Q |
217 |
atacatataca |
227 |
Q |
| |
|
||||||||||| |
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| T |
12162192 |
atacatataca |
12162202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 12406420 - 12406630
Alignment:
| Q |
17 |
atccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaacacctnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12406420 |
atccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaacacctaaaaaaa |
12406519 |
T |
|
| Q |
117 |
nnttaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcgtatgcatacat |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12406520 |
aattaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcgtatgcatacat |
12406619 |
T |
|
| Q |
217 |
atacatataca |
227 |
Q |
| |
|
||||||||||| |
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| T |
12406620 |
atacatataca |
12406630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 30324485 - 30324282
Alignment:
| Q |
17 |
atccaagatttgtagcaacaccagaattactcagaatagactttttccttccttaactccttaaatttgtagataagagttctttgaacacctnnnnnnn |
116 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30324485 |
atccaagatttgtagcaacaccaaagttactcagaatagactttttccttccttaactccttaaatttgtagatcagagttctttgaacacc-caaaaaa |
30324387 |
T |
|
| Q |
117 |
nnttaatagcaaaggcattcaatattttgttgtccgattagaaatatacaactctacaacgtatgcattcattaagatatacaacttcgtatgcatacat |
216 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
30324386 |
aattaatagcaaaagcattcaatattttgttgtccgattggaaatatacaactctacaacgtatgcattcattaagatatacaactttgtatgtatacat |
30324287 |
T |
|
| Q |
217 |
ataca |
221 |
Q |
| |
|
||||| |
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|
| T |
30324286 |
ataca |
30324282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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