View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_8 (Length: 638)
Name: NF5921_low_8
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 14 - 619
Target Start/End: Complemental strand, 31141360 - 31140754
Alignment:
| Q |
14 |
agagaagtagctagggaaaccgaggcatgaactcgtaacacatacattacatatcttcatgtcttaaagtttaccaataagtctcttgttggaactctgc |
113 |
Q |
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| T |
31141360 |
agagaggtagctagggaaaccgaggcatgaactcgtaacacatacattacatatcttcatgtcttaaagtttaccaataagtctcttgttggaactctgc |
31141261 |
T |
|
| Q |
114 |
aaagttagtctccttgttagtttggaaagttgttaatgtaacaatccaaagaattggcgagtttttgctacaacagaaacgattgatactgcctgaaata |
213 |
Q |
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| T |
31141260 |
aaagttagactccttgttagtttggaaagttgttaatgtaacaatccaaagaattggcgagtttttgctacaacagaaacgattgatactgcctgaaata |
31141161 |
T |
|
| Q |
214 |
gctgcatttgtcttgtaaccattaggtaagctcatagttaaaggttaaatgtgctgaaaacatgagaaattttgaagaaagagtgatgtagggtcagtga |
313 |
Q |
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| T |
31141160 |
gctgcattagtcttgtaaccattaggtaagctcatagttaaaggttaaatgtgctgaaaacatgagaaattttgaagaaagagtgatgtagggtcagtga |
31141061 |
T |
|
| Q |
314 |
cacttgtatctatgtcccaaaggatatccttcttacacatatgagta-aagagatggaattgatggatgcagatcgagaaagaaacaaatttgcggtagg |
412 |
Q |
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| T |
31141060 |
cacttgtatctatgtcccaaaggatatccttcttacacatatgagtagaagagatggaattgatggatgcagattgagaaagaaacaaatttgcggtagg |
31140961 |
T |
|
| Q |
413 |
ttgagttgaaacaaaatttgtatttcatgatgatgaatcgaagtatagaaaagtcatagtaaaacttctatacttaagtactacccggacatatacctct |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140960 |
ttgagttgaaacaaaatttgtatttcatgatgatgaatcaaagtatagaaacgtcgtagtaaaacttctatacttaagtactacccggacatatacctct |
31140861 |
T |
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| Q |
513 |
ttctttgcccgatgattgagtcaacatgtctccaaaagtcaacaagttcactaccaggccgccattacaatgttacagcatcttaagagtgtactctctt |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31140860 |
ttctttgcccgatgattgagtcaacatgtctccaaaagtcaacaagttcactaccaggccgccattacaatgttacagcatctcaagagtgtactctctt |
31140761 |
T |
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| Q |
613 |
gccaagg |
619 |
Q |
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| T |
31140760 |
gccaagg |
31140754 |
T |
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