View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921_low_80 (Length: 245)

Name: NF5921_low_80
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921_low_80
NF5921_low_80
[»] chr7 (26 HSPs)
chr7 (16-166)||(30607081-30607228)
chr7 (168-225)||(34748758-34748815)
chr7 (168-225)||(44314371-44314428)
chr7 (168-225)||(36495869-36495926)
chr7 (168-225)||(47346161-47346218)
chr7 (168-225)||(27585236-27585293)
chr7 (168-225)||(33909117-33909174)
chr7 (168-225)||(36270764-36270821)
chr7 (168-225)||(36495646-36495703)
chr7 (168-225)||(37756005-37756062)
chr7 (168-225)||(37756231-37756288)
chr7 (168-225)||(37761979-37762036)
chr7 (168-225)||(39550045-39550101)
chr7 (168-215)||(24240467-24240514)
chr7 (168-225)||(34914987-34915044)
chr7 (168-225)||(36270537-36270593)
chr7 (168-225)||(47346390-47346447)
chr7 (168-225)||(19843688-19843744)
chr7 (168-225)||(24240245-24240302)
chr7 (171-215)||(27729555-27729598)
chr7 (196-229)||(8681892-8681925)
chr7 (168-225)||(20296244-20296300)
chr7 (168-225)||(22206345-22206401)
chr7 (168-225)||(22228338-22228394)
chr7 (197-229)||(5266368-5266400)
chr7 (197-229)||(33834164-33834196)
[»] chr4 (15 HSPs)
chr4 (41-166)||(8647374-8647494)
chr4 (168-225)||(11290149-11290206)
chr4 (168-225)||(37097798-37097854)
chr4 (168-225)||(52810919-52810975)
chr4 (168-225)||(50868080-50868137)
chr4 (169-225)||(47845769-47845825)
chr4 (182-221)||(42901812-42901851)
chr4 (168-225)||(2016513-2016569)
chr4 (172-225)||(4026058-4026110)
chr4 (168-225)||(33912024-33912080)
chr4 (168-225)||(37288936-37288992)
chr4 (168-215)||(26941842-26941888)
chr4 (186-224)||(21644493-21644531)
chr4 (168-225)||(46528990-46529046)
chr4 (168-225)||(52810692-52810748)
[»] chr8 (11 HSPs)
chr8 (168-225)||(18464050-18464107)
chr8 (168-225)||(20232464-20232521)
chr8 (168-225)||(14019788-14019845)
chr8 (168-229)||(38287800-38287860)
chr8 (168-225)||(9596060-9596116)
chr8 (168-225)||(15711477-15711533)
chr8 (168-225)||(9596286-9596342)
chr8 (168-225)||(35908659-35908715)
chr8 (168-224)||(17607282-17607337)
chr8 (197-231)||(8056548-8056582)
chr8 (196-229)||(30065999-30066032)
[»] chr6 (8 HSPs)
chr6 (168-229)||(25183983-25184044)
chr6 (168-225)||(33396287-33396344)
chr6 (168-225)||(26842700-26842757)
chr6 (168-225)||(33396506-33396562)
chr6 (182-229)||(25184204-25184251)
chr6 (168-225)||(23591511-23591566)
chr6 (175-225)||(26339909-26339958)
chr6 (192-229)||(30539239-30539276)
[»] chr5 (19 HSPs)
chr5 (168-225)||(33040450-33040507)
chr5 (168-225)||(83877-83934)
chr5 (168-225)||(29396410-29396467)
chr5 (168-225)||(33040265-33040322)
chr5 (168-225)||(84101-84158)
chr5 (168-225)||(19439841-19439897)
chr5 (168-225)||(30329816-30329873)
chr5 (168-225)||(32395381-32395438)
chr5 (168-225)||(22196620-22196676)
chr5 (168-220)||(5095968-5096020)
chr5 (168-206)||(946723-946761)
chr5 (168-206)||(946870-946908)
chr5 (169-215)||(22196403-22196448)
chr5 (168-225)||(14769899-14769955)
chr5 (168-225)||(18541931-18541987)
chr5 (196-229)||(20720613-20720646)
chr5 (168-229)||(9850450-9850514)
chr5 (186-228)||(27429463-27429505)
chr5 (168-225)||(33040043-33040100)
[»] chr1 (21 HSPs)
chr1 (168-225)||(17294958-17295015)
chr1 (168-225)||(31411627-31411684)
chr1 (168-224)||(17294847-17294903)
chr1 (168-225)||(33562194-33562251)
chr1 (168-225)||(51722233-51722290)
chr1 (168-225)||(4187580-4187637)
chr1 (168-225)||(29228655-29228712)
chr1 (168-225)||(29383690-29383746)
chr1 (168-225)||(31411425-31411482)
chr1 (168-225)||(45443201-45443257)
chr1 (168-225)||(4187349-4187406)
chr1 (168-225)||(12287829-12287885)
chr1 (168-225)||(18585019-18585075)
chr1 (168-225)||(29228428-29228485)
chr1 (168-225)||(30604527-30604584)
chr1 (168-225)||(40521560-40521616)
chr1 (168-226)||(45858860-45858917)
chr1 (168-225)||(45858636-45858692)
chr1 (168-225)||(27958114-27958170)
chr1 (196-228)||(38871219-38871251)
chr1 (197-229)||(47086340-47086372)
[»] chr3 (21 HSPs)
chr3 (168-225)||(15820672-15820729)
chr3 (168-225)||(53966213-53966270)
chr3 (168-225)||(10450491-10450548)
chr3 (168-225)||(10450715-10450772)
chr3 (168-225)||(48511477-48511534)
chr3 (168-225)||(11244608-11244665)
chr3 (168-225)||(42190543-42190600)
chr3 (168-213)||(9179114-9179158)
chr3 (168-225)||(16051602-16051658)
chr3 (168-225)||(24453759-24453815)
chr3 (176-225)||(48511706-48511755)
chr3 (168-225)||(48837075-48837131)
chr3 (168-220)||(40769984-40770035)
chr3 (170-225)||(16045437-16045491)
chr3 (170-225)||(16060952-16061006)
chr3 (168-225)||(51734624-51734679)
chr3 (168-225)||(9180349-9180405)
chr3 (168-225)||(10856693-10856749)
chr3 (197-229)||(26926916-26926948)
chr3 (186-222)||(42576289-42576325)
chr3 (196-228)||(44145185-44145217)
[»] chr2 (20 HSPs)
chr2 (168-229)||(32810939-32811000)
chr2 (168-225)||(11349860-11349917)
chr2 (168-225)||(15961867-15961924)
chr2 (168-225)||(15962224-15962281)
chr2 (168-225)||(28193642-28193698)
chr2 (168-215)||(39420677-39420724)
chr2 (167-225)||(936791-936849)
chr2 (168-225)||(4506107-4506163)
chr2 (168-225)||(10862125-10862181)
chr2 (168-225)||(11350254-11350311)
chr2 (168-220)||(10862287-10862338)
chr2 (169-220)||(15962000-15962051)
chr2 (168-225)||(4342325-4342381)
chr2 (168-221)||(14280260-14280313)
chr2 (168-225)||(33532803-33532859)
chr2 (168-225)||(44266375-44266431)
chr2 (175-225)||(17324088-17324137)
chr2 (168-225)||(17326098-17326154)
chr2 (168-225)||(28193402-28193458)
chr2 (196-229)||(32667191-32667224)
[»] scaffold0785 (1 HSPs)
scaffold0785 (168-205)||(2983-3019)
[»] scaffold0012 (1 HSPs)
scaffold0012 (168-225)||(165765-165821)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 30607228 - 30607081
Alignment:
Q  16 attgactatgtactaaacaaattataccaaagaaaaggaagcacgtaaaaacagaggaaaaggaattaccttgaaaagggcaagccaaggcaatccattt 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  30607228 attgactatgtactaaacaaattacaccaaagaaaaggaagcacgtaaaaacagaagaaaaggaattaccttgaaaagggcaagccaaggcaatccactt 30607129  T
Q  116 attcacatattttgaaaacacctaccaattagaaacaacataaataaccac 166  Q
    |||||| |||||||||||||||| |||   || ||||||||||||||||||    
T  30607128 attcacgtattttgaaaacacctgcca---agcaacaacataaataaccac 30607081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 34748758 - 34748815
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  34748758 gttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttga 34748815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 44314428 - 44314371
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  44314428 gttagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttga 44314371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 36495869 - 36495926
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  36495869 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggattcttga 36495926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 47346218 - 47346161
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  47346218 gttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttga 47346161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 27585236 - 27585293
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  27585236 gttagcagccaacactcaggtgggatttagtcccacatcggatagataggattcttga 27585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33909117 - 33909174
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  33909117 gttaacggccaactctcgggtgggatttagtcccacatcggatagataggattcttga 33909174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 36270821 - 36270764
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||||||||||||| |||||||||  |||||||| |||||||||    
T  36270821 gttagcggccaacactcgggtgggattttgtcccacattggatagataggattcttga 36270764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 36495646 - 36495703
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||    
T  36495646 gttagcggccaactctcgggtggcatttagtcccacatcggatagataggattcttga 36495703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37756062 - 37756005
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  37756062 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 37756005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37756288 - 37756231
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  37756288 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 37756231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37762036 - 37761979
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  37762036 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 37761979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 39550101 - 39550045
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  39550101 gttagcggccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 39550045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 24240514 - 24240467
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagata 215  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  24240514 gttagcggccaactctcgggtgggatttagtcccacatcggatagata 24240467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 34915044 - 34914987
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||| | |||||||||    
T  34915044 gttagcagccagcactcgggtgggatttagtcccacatcggatagacaggattcttga 34914987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 36270593 - 36270537
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  36270593 gttagcggtcaacactcgg-tgggatttagtcccacatcggatagataggattcttga 36270537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 47346447 - 47346390
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||| || ||||||    
T  47346447 gttagcggccaactctcgggtgggatttagtcccacatcggaaagataggaatcttga 47346390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 19843688 - 19843744
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||   |||||||||||||| |||||||||||| |||||||||    
T  19843688 gttagcggccaacactcgaa-gggatttagtcccaaatcagatagataggattcttga 19843744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 24240302 - 24240245
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||| ||| ||||||||||||||||||||| |||||||| || ||||||    
T  24240302 gttagcagccaactctcaggtgggatttagtcccacatcggatagataggaatcttga 24240245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 27729598 - 27729555
Alignment:
Q  171 agcggccaacactcgggtgggatttagtcccacatcagatagata 215  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  27729598 agcggccaacactcgg-tgggatttagtcccacatcggatagata 27729555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 8681892 - 8681925
Alignment:
Q  196 agtcccacatcagatagataagattcttgataag 229  Q
    ||||||||||||||||||||||| ||||||||||    
T  8681892 agtcccacatcagatagataagactcttgataag 8681925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 20296244 - 20296300
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | |||||||||||||||||  |||||| | |||||||||    
T  20296244 gttagcggccaacactcgag-gggatttagtcccacattggatagagaggattcttga 20296300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 22206401 - 22206345
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||| | ||||||| |||||||||||||||||||  ||||||| |||||||||    
T  22206401 gttagcggcaatcactcgg-tgggatttagtcccacatcgaatagataggattcttga 22206345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 22228338 - 22228394
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||| | ||||||| |||||||||||||||||||  ||||||| |||||||||    
T  22228338 gttagcggcaatcactcgg-tgggatttagtcccacatcgaatagataggattcttga 22228394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 5266368 - 5266400
Alignment:
Q  197 gtcccacatcagatagataagattcttgataag 229  Q
    |||||||||||||||||||||| ||||||||||    
T  5266368 gtcccacatcagatagataagactcttgataag 5266400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 33834164 - 33834196
Alignment:
Q  197 gtcccacatcagatagataagattcttgataag 229  Q
    |||||||||||||||||||||| ||||||||||    
T  33834164 gtcccacatcagatagataagactcttgataag 33834196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 41 - 166
Target Start/End: Original strand, 8647374 - 8647494
Alignment:
Q  41 accaaagaaaaggaagcacgtaaaaacagaggaaaaggaattaccttgaaaagggcaagccaaggcaatccatttattcacatattttgaaaacacctac 140  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  8647374 accaaagaaaaggaagcacgtaaaaacag--gaaaaggaattaccttgaaaagggcaagccaaggcaatccacttattcacatattttgaaaacacctgc 8647471  T
Q  141 caattagaaacaacataaataaccac 166  Q
    ||   || ||||||||||||||||||    
T  8647472 ca---agcaacaacataaataaccac 8647494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 11290149 - 11290206
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  11290149 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 11290206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37097854 - 37097798
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  37097854 gttagcgaccaacactcgg-tgggatttagtcccacatcagatagataggattcttga 37097798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 52810975 - 52810919
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  52810975 gttagcggccaacactcgg-tgggatttagtcccacatcggatagaaaagattcttga 52810919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 50868137 - 50868080
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  50868137 gttagcgaccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 50868080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 47845769 - 47845825
Alignment:
Q  169 ttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| ||||||||||||||||||||||||||||| || |||||||| | |||||||    
T  47845769 ttagcagccaacactcgggtgggatttagtcccacgtcggatagataggtttcttga 47845825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 42901812 - 42901851
Alignment:
Q  182 ctcgggtgggatttagtcccacatcagatagataagattc 221  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  42901812 ctcgggtgggatttagtcccacatcagatagataggattc 42901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 2016513 - 2016569
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| |||||||||||| | ||||||||||| ||||||||||||||| |||||||||    
T  2016513 gttagtggccaacactcgag-gggatttagtctcacatcagatagataggattcttga 2016569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 4026058 - 4026110
Alignment:
Q  172 gcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| | ||||||||||||||||||| |||||||| |||||||||    
T  4026058 gcggccaacactcag-tgggatttagtcccacatcggatagataggattcttga 4026110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33912024 - 33912080
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||||| ||| |||||    
T  33912024 gttagcggccaacactcgg-tgggatttagtcccacatcgggtagataggatacttga 33912080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 37288992 - 37288936
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| ||||||| |||| ||||||||||||||||||| |||||||| |||||||||    
T  37288992 gttagctgccaacaatcgg-tgggatttagtcccacatcggatagatatgattcttga 37288936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 26941842 - 26941888
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagata 215  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||    
T  26941842 gttagcggccaacactcgg-tgggatttagtcccacatcgaatagata 26941888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 21644493 - 21644531
Alignment:
Q  186 ggtgggatttagtcccacatcagatagataagattcttg 224  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  21644493 ggtgggatttaatcccacatcagatagataggattcttg 21644531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 46529046 - 46528990
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||| |||||||||||| |||||| |||||||  |||||||||    
T  46529046 gttagcagccaacactcgg-tgggatttagtctcacatcggatagattggattcttga 46528990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 52810748 - 52810692
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||   ||| ||||||||| ||||| ||||||||||||||||||    
T  52810748 gttagcggccaacactcaa-tggaatttagtcctacatcggatagataagattcttga 52810692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 18464050 - 18464107
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18464050 gttagcggccaacactcgggtgggatttagtcccacatcagatagataggattcttga 18464107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 20232521 - 20232464
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  20232521 gttagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttga 20232464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 14019788 - 14019845
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  14019788 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttga 14019845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 38287860 - 38287800
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttgataag 229  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  38287860 gttaggggccaacactcgg-tgggatttagtcccacatcggatagataggattcttgataag 38287800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 9596116 - 9596060
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  9596116 gttagcggccaacactcgg-tgggatttagttccacatcggatagataggattcttga 9596060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 15711477 - 15711533
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  15711477 gttagcagccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 15711533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 9596342 - 9596286
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| ||||||||||||| |||||||||||| || ||| ||||||||||||||||||    
T  9596342 gttagtggccaacactcgg-tgggatttagtctcatatcggatagataagattcttga 9596286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 35908659 - 35908715
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| | |||||| ||| |||||    
T  35908659 gttagcggccaacactcgg-tgggatttagtcccacatcgggtagataggatacttga 35908715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 17607337 - 17607282
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttg 224  Q
    |||||||||||||||||| || |||||||||| |||||| |||||||| ||||||||    
T  17607337 gttagcggccaacactcgagt-ggatttagtctcacatcggatagataggattcttg 17607282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 8056582 - 8056548
Alignment:
Q  197 gtcccacatcagatagataagattcttgataagtg 231  Q
    |||||||||||||||||||||| ||||||||||||    
T  8056582 gtcccacatcagatagataagactcttgataagtg 8056548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 30065999 - 30066032
Alignment:
Q  196 agtcccacatcagatagataagattcttgataag 229  Q
    ||||||||||||||||||||||| ||||||||||    
T  30065999 agtcccacatcagatagataagactcttgataag 30066032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 25183983 - 25184044
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttgataag 229  Q
    |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  25183983 gttagcagccaacactcgggtgggatttagtcccgcatcggatagataagattcttgataag 25184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33396287 - 33396344
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  33396287 gttagcggccaacactagggtgggatttagtcccacatcggatagataggattcttga 33396344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 26842700 - 26842757
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  26842700 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttga 26842757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33396506 - 33396562
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||    
T  33396506 gttagcggccaacactcgggtgggatttagt-ccacatcggatagataggatttttga 33396562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 25184204 - 25184251
Alignment:
Q  182 ctcgggtgggatttagtcccacatcagatagataagattcttgataag 229  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||    
T  25184204 ctcgggtgggatttagtcccgcatcggatagataggattcttgataag 25184251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 23591511 - 23591566
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| ||||||||||||   ||||||| ||||||||||||||||||||||||||||    
T  23591511 gttagcagccaacactcggt--ggatttaatcccacatcagatagataagattcttga 23591566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 26339958 - 26339909
Alignment:
Q  175 gccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||| | |||||||||||||||||| ||||||||||| ||||||    
T  26339958 gccaacactcgag-gggatttagtcccacatcggatagataagaatcttga 26339909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 30539239 - 30539276
Alignment:
Q  192 atttagtcccacatcagatagataagattcttgataag 229  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  30539239 atttagtcccacatcggatagataagactcttgataag 30539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33040450 - 33040507
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  33040450 gttagcggccaacactcgcgtgggatttagtcccacatcagatagataggattcttga 33040507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 83934 - 83877
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  83934 gttagcggccaacactcgggtgggatttagtcccacatcggatatataggattcttga 83877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 29396467 - 29396410
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  29396467 gttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttga 29396410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33040265 - 33040322
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  33040265 gttagcggccaacactcgcgtgggatttagtcccacatcggatagataggattcttga 33040322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 84158 - 84101
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| ||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  84158 gttagtggccaacactcgggtgggatttagtcccacatcggatatataggattcttga 84101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 19439841 - 19439897
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  19439841 gttagcggccaacactcgag-gggatttagtcccacatcagatagataggattcttga 19439897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 30329816 - 30329873
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| |||||| |||||||||||||||||| |||||||| |||||||||    
T  30329816 gttagcggccaactctcgggagggatttagtcccacatcggatagataggattcttga 30329873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 32395438 - 32395381
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  32395438 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 32395381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 22196676 - 22196620
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||    
T  22196676 gttagcggccaacactcgg-tgggatttagtcccacatcggatagatatgactcttga 22196620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 5096020 - 5095968
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagatt 220  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||| ||||    
T  5096020 gttagcggtcaacactcgggtgggatttactcccacatcggatagataggatt 5095968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 946723 - 946761
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatc 206  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  946723 gttagcggccaactctcgggtgggatttagtcccacatc 946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 946870 - 946908
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatc 206  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  946870 gttagcggccaactctcgggtgggatttagtcccacatc 946908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 22196448 - 22196403
Alignment:
Q  169 ttagcggccaacactcgggtgggatttagtcccacatcagatagata 215  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  22196448 ttagcggccaacactcgg-tgggatttagtcccacatcggatagata 22196403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 14769955 - 14769899
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| || |||||||||| |||||| |||||||| |||||||||    
T  14769955 gttagcggccaacactcgagt-ggatttagtctcacatcggatagataggattcttga 14769899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 18541931 - 18541987
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||| || |||||||||||| |||||| |||||||| |||||||||    
T  18541931 gttagcggccaacacttgg-tgggatttagtctcacatcggatagataggattcttga 18541987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 20720646 - 20720613
Alignment:
Q  196 agtcccacatcagatagataagattcttgataag 229  Q
    ||||||||||||||||||||||||||||||||||    
T  20720646 agtcccacatcagatagataagattcttgataag 20720613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 9850450 - 9850514
Alignment:
Q  168 gttagcggccaacactcgggtggg---atttagtcccacatcagatagataagattcttgataag 229  Q
    |||||| |||||||||||||||||   ||||| ||||||||  |||||||| |||||||||||||    
T  9850450 gttagcagccaacactcgggtgggtggatttattcccacattggatagataggattcttgataag 9850514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 27429505 - 27429463
Alignment:
Q  186 ggtgggatttagtcccacatcagatagataagattcttgataa 228  Q
    |||||||||||||||||||||| || |||| ||||||||||||    
T  27429505 ggtgggatttagtcccacatcaaatggatatgattcttgataa 27429463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 33040043 - 33040100
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||| |||||| ||||||||||||||| ||||||  ||| ||| |||||||||    
T  33040043 gttagcggctaacacttgggtgggatttagtctcacatcgaatatataggattcttga 33040100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 17294958 - 17295015
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  17294958 gttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttga 17295015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 31411684 - 31411627
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31411684 gttagtggccaacactcgggtgggatttagtcccacatcagatagataggattcttga 31411627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 17294847 - 17294903
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttg 224  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17294847 gttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttg 17294903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 33562251 - 33562194
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  33562251 gttagcggccaacactcgggtgggttttagtcccacatcggatagataggattcttga 33562194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 51722233 - 51722290
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  51722233 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttga 51722290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4187637 - 4187580
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  4187637 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 4187580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 29228655 - 29228712
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  29228655 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 29228712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 29383746 - 29383690
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||    
T  29383746 gttagcggccaacactcgggtgg-atttagtcccacatcggatagataagatacttga 29383690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 31411482 - 31411425
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  31411482 gttagcgaccaacactcgggtgggatttagtctcacatcggatagataggattcttga 31411425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 45443201 - 45443257
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  45443201 gttagcggccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 45443257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4187406 - 4187349
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||||| || ||||||    
T  4187406 gttagcggccaactctcgagtgggatttagtcccacatcggatagataggaatcttga 4187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 12287829 - 12287885
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  12287829 gttagtggccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 12287885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 18585019 - 18585075
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  18585019 gttagcagccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 18585075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 29228428 - 29228485
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| |||||||||||||||| |||||||| |||||||| || ||||||    
T  29228428 gttagcggccaactctcgggtgggatttagacccacatcggatagataggaatcttga 29228485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 30604584 - 30604527
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||| |||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  30604584 gttagcggtcaactctcgggtgggatttagtcccacatcggatagataggaatcttga 30604527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 40521616 - 40521560
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||    
T  40521616 gttagcggccaacactcgag-gtgatttagtcccacatcggatagataagattcttga 40521560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 45858860 - 45858917
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttgat 226  Q
    |||||||||||||||||| | ||||||||||| |||||| |||||||| ||||||||||    
T  45858860 gttagcggccaacactcgag-gggatttagtctcacatcggatagataggattcttgat 45858917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 45858636 - 45858692
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||  | |||||||||||||||||| |||||||| |||||||||    
T  45858636 gttagcggccaacactcatg-gggatttagtcccacatcggatagataggattcttga 45858692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 27958170 - 27958114
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| ||||||||||||  ||||||||||||| ||| ||||||||| |||||||||    
T  27958170 gttagcagccaacactcgga-gggatttagtcccgcattagatagataggattcttga 27958114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 38871251 - 38871219
Alignment:
Q  196 agtcccacatcagatagataagattcttgataa 228  Q
    ||||||||||||||||||||||| |||||||||    
T  38871251 agtcccacatcagatagataagactcttgataa 38871219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 47086372 - 47086340
Alignment:
Q  197 gtcccacatcagatagataagattcttgataag 229  Q
    |||||||||||||||||||||| ||||||||||    
T  47086372 gtcccacatcagatagataagactcttgataag 47086340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 15820729 - 15820672
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  15820729 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttga 15820672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 53966213 - 53966270
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  53966213 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggattcttga 53966270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 10450548 - 10450491
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  10450548 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttga 10450491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 10450772 - 10450715
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  10450772 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttga 10450715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 48511534 - 48511477
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  48511534 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 48511477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 11244665 - 11244608
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| | |||||||||||||||||||||||||||||| |||||||| | |||||||    
T  11244665 gttagcagtcaacactcgggtgggatttagtcccacatcggatagataggtttcttga 11244608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 42190600 - 42190543
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| || ||||||    
T  42190600 gttagcggccaactctcgggtgggatttaatcccacatcggatagataggaatcttga 42190543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 9179114 - 9179158
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagataga 213  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  9179114 gttagcggccaacactcgg-tgggatttagtcccacatcggataga 9179158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 16051658 - 16051602
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||   |||||||||||||||||||||||| |||| ||||||||    
T  16051658 gttagcggccaacactcaa-tgggatttagtcccacatcagatatataatattcttga 16051602  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 24453759 - 24453815
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||| | |||||||    
T  24453759 gttagcggccaacactcgag-gggatttagtcccacatcggatagatagggttcttga 24453815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 48511755 - 48511706
Alignment:
Q  176 ccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  48511755 ccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 48511706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 48837131 - 48837075
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||| |||| ||||    
T  48837131 gttagctgccaacactcgg-tgggatttagtcccacatcggatagataggattattga 48837075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 40770035 - 40769984
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagatt 220  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||| ||||    
T  40770035 gttagcggccaacactcgag-gggatttagtcccacatcggatagatatgatt 40769984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 16045491 - 16045437
Alignment:
Q  170 tagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||  ||||||||||||||||||| |||| |||| ||||||||    
T  16045491 tagcggccaacactcga-tgggatttagtcccacatcggatatataatattcttga 16045437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 16061006 - 16060952
Alignment:
Q  170 tagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||  ||||||||||||||||||| |||| |||| ||||||||    
T  16061006 tagcggccaacactcga-tgggatttagtcccacatcggatatataatattcttga 16060952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 51734679 - 51734624
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| ||||||||||||   ||||||||||||||||| |||||||| |||||||||    
T  51734679 gttagcagccaacactcggt--ggatttagtcccacatcggatagataggattcttga 51734624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 9180349 - 9180405
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||  | ||||||||||||||||| |||||||| |||||||||    
T  9180349 gttagcggccaaccctcga-tcggatttagtcccacatcggatagataggattcttga 9180405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 10856749 - 10856693
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||| ||| || ||||||||||||||||||| ||| |||| |||||||||    
T  10856749 gttagcggccaatacttgg-tgggatttagtcccacatcggatggataggattcttga 10856693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 26926916 - 26926948
Alignment:
Q  197 gtcccacatcagatagataagattcttgataag 229  Q
    |||||||||||||||||||||| ||||||||||    
T  26926916 gtcccacatcagatagataagactcttgataag 26926948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 42576289 - 42576325
Alignment:
Q  186 ggtgggatttagtcccacatcagatagataagattct 222  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  42576289 ggtgggatttagtcccacatcggattgataagattct 42576325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 44145217 - 44145185
Alignment:
Q  196 agtcccacatcagatagataagattcttgataa 228  Q
    ||||||||||||||||||||||| |||||||||    
T  44145217 agtcccacatcagatagataagactcttgataa 44145185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 32811000 - 32810939
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttgataag 229  Q
    |||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||    
T  32811000 gttagcagccaacactcgggtgggatttagtcccgcatcggatagataggattcttgataag 32810939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 11349917 - 11349860
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||    
T  11349917 gttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttga 11349860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 15961924 - 15961867
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  15961924 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 15961867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 15962281 - 15962224
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  15962281 gttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttga 15962224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 28193698 - 28193642
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  28193698 gttagcggccaacactcgag-gggatttagtcccacatcagatagataggattcttga 28193642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 215
Target Start/End: Original strand, 39420677 - 39420724
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagata 215  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  39420677 gttagcggccaactctcgggtgggatttagtcccacatcggatagata 39420724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 936791 - 936849
Alignment:
Q  167 ggttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||||| || ||||||    
T  936791 ggttagcggccaactctcgggtgggatttagtctcacatcggatagataggaatcttga 936849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4506163 - 4506107
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  4506163 gttagctgccaacactcgg-tgggatttagtcccacatcggatagataggattcttga 4506107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 10862181 - 10862125
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||| |||||||||    
T  10862181 gttagcggccaacactcgag-gggatttagtcccacatcggatagataggattcttga 10862125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 11350311 - 11350254
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||| |||||||||||||||||||||||||||| ||| |||||||| | |||||||    
T  11350311 gttagcagccaacactcgggtgggatttagtcccatatcggatagataggtttcttga 11350254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 10862287 - 10862338
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagatt 220  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||    
T  10862287 gttagcggccaacactcgag-gggatttagtcccacatcggatagataagatt 10862338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 15962051 - 15962000
Alignment:
Q  169 ttagcggccaacactcgggtgggatttagtcccacatcagatagataagatt 220  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||| ||||    
T  15962051 ttagcggccaactctcgggtgggatttagtcccacattggatagataggatt 15962000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4342381 - 4342325
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||| | ||||||||||||||||||| ||||||||  ||||||||    
T  4342381 gttagcggccaacactcag-tgggatttagtcccacatcggatagatagaattcttga 4342325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 14280260 - 14280313
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattc 221  Q
    |||||| |||||||||| ||||||||||||||||||||  |||||||| |||||    
T  14280260 gttagcagccaacactcaggtgggatttagtcccacattggatagataggattc 14280313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 33532859 - 33532803
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| |||||||||||| | |||||||||||||||||| |||||||| |||||||||    
T  33532859 gttagtggccaacactcgag-gggatttagtcccacatcggatagataggattcttga 33532803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 44266431 - 44266375
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||| |||||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  44266431 gttagtggccaacattcgag-gggatttagtcccacatcagatagataagatttttga 44266375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 17324137 - 17324088
Alignment:
Q  175 gccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||| | |||||||||| |||||||||||||||| |||||||||    
T  17324137 gccaacactcgag-gggatttagttccacatcagatagataggattcttga 17324088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 17326154 - 17326098
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    ||||||||||||||||  | || |||||||||||||||| |||||||| |||||||||    
T  17326154 gttagcggccaacacttag-tgagatttagtcccacatctgatagataggattcttga 17326098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 28193458 - 28193402
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||| ||||||||||||| | ||||||||||| |||||| |||||||| |||||||||    
T  28193458 gttatcggccaacactcgag-gggatttagtctcacatcggatagataggattcttga 28193402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 32667191 - 32667224
Alignment:
Q  196 agtcccacatcagatagataagattcttgataag 229  Q
    ||||||||||||||||||||||| ||||||||||    
T  32667191 agtcccacatcagatagataagactcttgataag 32667224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 3019 - 2983
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacat 205  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3019 gttagcggccaacactcgg-tgggatttagtcccacat 2983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 165765 - 165821
Alignment:
Q  168 gttagcggccaacactcgggtgggatttagtcccacatcagatagataagattcttga 225  Q
    |||||||||||||||||| | |||||||||||| ||||| ||||||||  ||||||||    
T  165765 gttagcggccaacactcgag-gggatttagtcctacatcggatagatagaattcttga 165821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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