View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_84 (Length: 240)
Name: NF5921_low_84
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_84 |
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| [»] scaffold0141 (2 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 7894 - 8072
Alignment:
| Q |
1 |
acatgtgggagacgaagatgagaaagaagcaaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7894 |
acatgtgggagacgaagatgagaaagaagcaaatttaaaaaatttcatctatcccacagaca-gagaacagcatctcttcaattcaacaccaaaatgatg |
7992 |
T |
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| Q |
101 |
aagtggcatgtttggtttctcaaa-ggggtaaagtggaaaacataaatattctgcagaaggaaaaactgcttgtttaaaa |
179 |
Q |
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| T |
7993 |
aagtggcatgtttggtctctcaaagggggtaaagtggaaaacataaatgttctgcagaaggaaaaactgcttgtttaaaa |
8072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 8094 - 8132
Alignment:
| Q |
186 |
cataaaaggcatcagtgtaaattaagaatgagaaaaaat |
224 |
Q |
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| T |
8094 |
catcaaaggcatcactgtaaattaagaatgagaaaaaat |
8132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 8429653 - 8429508
Alignment:
| Q |
1 |
acatgtgggagacgaagatgagaaagaagcaaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatg |
100 |
Q |
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| T |
8429653 |
acatgtgggagacgaagatgagaaagaagcaaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatg |
8429554 |
T |
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| Q |
101 |
aagtggcatgtttggtttctcaaaggggtaaagtggaaaacataaa |
146 |
Q |
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| T |
8429553 |
aagtggcatgcttggtctctcaaaggggtaaagtggaaaacataaa |
8429508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 8449764 - 8449908
Alignment:
| Q |
1 |
acatgtgggagacgaagatgagaaagaagcaaattttaaaaatttcatctatcccacaaacaagagaacagcatctcttcaattcaacaccaaaatgatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8449764 |
acatgtgggagacgaagatgagaaagaagcaaattttaaaaattttatctatcccacaaaca-gagaacagcatctcttcaattcaacaccaaaatgatg |
8449862 |
T |
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| Q |
101 |
aagtggcatgtttggtttctcaaaggggtaaagtggaaaacataaa |
146 |
Q |
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| T |
8449863 |
aagtggcatgtttggtctctcaaaggggtaaagtggaaaacataaa |
8449908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 8429513 - 8429475
Alignment:
| Q |
186 |
cataaaaggcatcagtgtaaattaagaatgagaaaaaat |
224 |
Q |
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| T |
8429513 |
cataaaaggcatcagtgtaaattaagaatgagaaaaaat |
8429475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 8449903 - 8449939
Alignment:
| Q |
186 |
cataaaaggcatcagtgtaaattaagaatgagaaaaa |
222 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
8449903 |
cataaaaggcatcactgtaaattaagaatgagaaaaa |
8449939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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