View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_85 (Length: 237)
Name: NF5921_low_85
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50580957 - 50581178
Alignment:
| Q |
1 |
gagttcttcatctgtaggatgaaatcgaaatcccggtggtagggtttcctcttttccaccactttcttccattaattctatatccttggtcctctccttc |
100 |
Q |
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| T |
50580957 |
gagttcttcatctgtaggatgaaatcgaaatcccggtggtagggtttcctcttttccaccactttcttccattaattctatatccttggtcctctccttc |
50581056 |
T |
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| Q |
101 |
tccatctgtgtataccgcacaaaaagttacataatcatagatttcttaattagtttaaaccatgcaagcacaaaaattaagttcaattaagcatgttcta |
200 |
Q |
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| T |
50581057 |
tccatctgtgtataccgcacaaaaagttacataatcatagatttcttaattagtttaaaccatgcaagcacaaaaattaagttcaattaagcatgttcta |
50581156 |
T |
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| Q |
201 |
agttcacttgctagcacattct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
50581157 |
agttcacttgctagcacattct |
50581178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1058286 - 1058233
Alignment:
| Q |
1 |
gagttcttcatctgtaggatgaaatcgaaatcccggtggtagggtttcctcttt |
54 |
Q |
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|||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
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| T |
1058286 |
gagttcttcatcggtaggatgaaatcgaaatccaggaggtagggtttcctcttt |
1058233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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