View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_low_89 (Length: 225)
Name: NF5921_low_89
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 506578 - 506388
Alignment:
| Q |
16 |
gcaaaggccaataaaaacaacaatacaaaaacatcagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaagggggc |
115 |
Q |
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| T |
506578 |
gcaaaggccaataaaaacaacaatacaaaaacatcagggtgccgtatataggcgaaacaccccaatcaaataaaccaccaaaaaccagaaaaaagggggc |
506479 |
T |
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| Q |
116 |
gcacatattaataagtgaaattgaacattctgnnnnnnnnnatgcaacatcctgcttgttagttgcaataccatagacaaatatgataaac |
206 |
Q |
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| T |
506478 |
gcacatattaataattgaaattgaacattctatttttgtttatgcgacatcctgcttgttagttgcaataccatagacaaatgtggtaaac |
506388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 3595171 - 3595067
Alignment:
| Q |
16 |
gcaaaggccaataaaaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaaaaaggggg |
114 |
Q |
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|||||||||| ||||||||||||| ||||||| ||||||||| | || ||||| ||||||||| | || ||||||||||||||||||||||| |||| |
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| T |
3595171 |
gcaaaggccagcaaaaacaacaatataaaaacaaacagggtgccttctataggcggcacaccccaa-ctataaaaccaccaaaaaccagaaaaaatgggg |
3595073 |
T |
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| Q |
115 |
cgcaca |
120 |
Q |
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||||| |
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| T |
3595072 |
ggcaca |
3595067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 5179730 - 5179622
Alignment:
| Q |
16 |
gcaaaggccaataaaaacaacaatacaaaaacat-cagggtgccgtatacaggcgaaacaccccaatcaattaaaccaccaaaaaccagaaa-aaagggg |
113 |
Q |
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|||||||||| |||||||||| ||||||| || |||||||||||||| ||||| |||||||||| | || |||||| ||||||||| ||| || |||| |
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| T |
5179730 |
gcaaaggccagcaaaaacaacagtacaaaatcaaacagggtgccgtatataggcggaacaccccaa-ccataaaaccaacaaaaaccataaacaatgggg |
5179632 |
T |
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| Q |
114 |
gcgcacatat |
123 |
Q |
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||||| |||| |
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| T |
5179631 |
gcgcaaatat |
5179622 |
T |
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